Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0694.Seq
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59776| Best HMM Match : ABC_tran (HMM E-Value=0.00016) 48 7e-06
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 40 0.001
SB_37816| Best HMM Match : ABC_tran (HMM E-Value=0.03) 37 0.017
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 36 0.040
SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 35 0.069
SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08) 33 0.16
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 33 0.16
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41) 33 0.28
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.37
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.49
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.64
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28) 31 0.85
SB_23783| Best HMM Match : ABC_tran (HMM E-Value=6.7e-07) 31 0.85
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.85
SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 31 1.1
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 31 1.1
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 30 1.5
SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09) 30 1.5
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 30 2.0
SB_44626| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 30 2.0
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 29 2.6
SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11) 29 2.6
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0) 29 2.6
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.4
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.4
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 29 4.5
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 29 4.5
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.9
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24) 28 7.9
SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36) 28 7.9
SB_23594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_3746| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_59776| Best HMM Match : ABC_tran (HMM E-Value=0.00016)
Length = 113
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/76 (35%), Positives = 37/76 (48%)
Frame = +3
Query: 252 CATAGAGRPYRVLSGTAFGWSATARHIARALMNGGQVILADEPTGALDSHSGEEVMAILH 431
CA G P RV G + G A ++ G ++ ADEPT LDS + V+A L
Sbjct: 30 CADTVIGTPGRV-RGIS-GGEQKRLSFASEILTGPSILFADEPTSGLDSFMAQSVVATLQ 87
Query: 432 QLRDRGHTVIIVTHDP 479
+L +G T+I H P
Sbjct: 88 KLAAQGRTIICTIHQP 103
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +2
Query: 2 SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAE 181
SGKSTL+ + L++ GT V G + D D + ++RR+ G +FQ+++L HLT
Sbjct: 58 SGKSTLLRCVNLLEQPNEGTIHVGGFEATDPDVD-IDKMRRK-VGMVFQQFNLFPHLTVL 115
Query: 182 QNVEV 196
+N+ +
Sbjct: 116 ENLTI 120
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 229 ATASCPGVAQRLGLEDRTEYYPAQLSGGQQQRV 327
A A +R+ + ++ + YP+QLSGGQQQRV
Sbjct: 133 AEALARNYLERVHIPEQADKYPSQLSGGQQQRV 165
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAIL 428
IARAL +L DEPT ALD EV+ ++
Sbjct: 167 IARALCMDPIAMLFDEPTSALDPEMINEVLDVM 199
>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 479
IA L+N +I DEPT LDS S + ++++ L G TV+ H P
Sbjct: 270 IALELINNPPLIFLDEPTSGLDSSSAYQCISLMRTLAHGGRTVVCTIHQP 319
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
IARA++ +++L DE T ALDS S V L +L +G TVI + H
Sbjct: 1200 IARAILKNPKILLLDEATSALDSESEHLVQEALERLM-KGRTVITIAH 1246
>SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 246 RSCATAGAGRPYRVLSGTAFGWSATARHIARALMNGGQVILADEPTGALDSHSGEEVMAI 425
R CA G P R + G + G A ++ ++ ADEPT LD+ + V+
Sbjct: 319 RRCADTMIGIPGR-MRGIS-GGEKKRLSFASEVLTDPAILFADEPTSGLDAFMAQTVITT 376
Query: 426 LHQLRDRGHTVIIVTHDP 479
L ++ +G TV+ H P
Sbjct: 377 LQKMAAQGRTVVCTIHQP 394
>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
IARAL+ +++L DE T ALD+ S V +++ +GHTV+I+ H
Sbjct: 503 IARALIRNPKILLLDEATSALDAESEHLVQDAIYK-NLQGHTVLIIAH 549
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
IARAL+ ++++ DE T ALD+ S V A L + R+ G T +++ H
Sbjct: 783 IARALVRNPRILILDEATSALDTESERVVQAALDKARE-GRTTLVIAH 829
>SB_37816| Best HMM Match : ABC_tran (HMM E-Value=0.03)
Length = 73
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
IARAL++ + +L DEP LD + + + L + G T+++VTH
Sbjct: 14 IARALVHRPRALLLDEPCAGLDPATRRQFLEALRDVARSGVTLVLVTH 61
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 294 GTAFGWSATAR-HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVII 464
G A AR ++ARA+ ++L D+P A+D+H G ++ + L+DR ++
Sbjct: 151 GVALSGGQKARINLARAVYYDADIVLLDDPLSAVDTHVGRQLFDECVYGLLKDR--ICVL 208
Query: 465 VTHDPQ 482
VTH Q
Sbjct: 209 VTHQLQ 214
>SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 781
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TVIIVTHDPQ 482
+I L+ ++ DEPT LDS S V+ L + +RG T++ V H P+
Sbjct: 347 NIGMELVVDPTLLFLDEPTSGLDSTSSLSVLNALRAVAERGRLTIVCVIHQPR 399
>SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)
Length = 771
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TVIIVTHDPQ 482
+I L+ ++ DEPT LDS S V+ L + ++G T++ V H P+
Sbjct: 321 NIGMELVVDPTLLFLDEPTSGLDSTSSLSVLNALRAVAEKGRLTIVCVIHQPR 373
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 146 QRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELRN 259
QR LSHL +QN ++ G+++++RL R Q+ +N
Sbjct: 346 QRCTALSHLLLKQNFPAICIHRGMKQEERLARYQQFKN 383
>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
Length = 336
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
IAR ++ V+L DE T ALD+ + + A L+ + T I+V H
Sbjct: 289 IARTVLKNPPVVLLDEATSALDTETERNIQASLNNM-CINRTTIVVAH 335
>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 884
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +2
Query: 2 SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAE 181
+GKSTL+ L + + +SGT + G+D++ LA+LRR + G Q+ + LT +
Sbjct: 533 AGKSTLIGALTGMIQPSSGTALIYGKDISRF--GDLAELRR-NIGVCPQQDVIFEFLTVK 589
Query: 182 QNVE 193
+++E
Sbjct: 590 EHLE 593
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 339 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
+L+ +V+ DEPT +D HS E+ +L Q + + V++ TH
Sbjct: 643 SLVGDPKVLFLDEPTSGMDPHSRREMWKLL-QGQCKEKCVLLTTH 686
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTH 473
++ARA+ V L D+P A+DSH G+ + I + + R T ++VTH
Sbjct: 680 NLARAVYFNADVYLLDDPLSAVDSHVGKHIFDKVIGPRGKLRKKTRVLVTH 730
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 2 SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAE 181
+GK+T M+IL L TSG+ + + + T D D + RE G Q L LT E
Sbjct: 238 AGKTTTMSILTGLFTPTSGSAMIDNKSILT-DIDGI----RESLGLCPQHNVLFDRLTVE 292
Query: 182 QNVE 193
+++E
Sbjct: 293 EHLE 296
>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
+ARAL+N ++I+ DE T +D ++ + + + G TVI + H
Sbjct: 378 LARALLNKNKIIVMDEATANVDFNTDRSIQETIRS-KFSGCTVITIAH 424
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 285 VLSGTAFGWSATARHIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVII 464
V +G G + A AL+ ++ DEPT +D + + I+ + G TVI+
Sbjct: 1487 VCAGKYSGGNKRKLSTAIALVGNPAIVFMDEPTTGMDPKARRFLWNIITGIMKEGRTVIL 1546
Query: 465 VTH 473
+H
Sbjct: 1547 TSH 1549
>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
Length = 951
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 482
+ARAL + L D+P A+D+H G+ + + G +V+ TH Q
Sbjct: 176 LARALYADKDLYLLDDPLSAVDAHVGQHIFKHCIKGSLWGKSVLFATHQLQ 226
>SB_23783| Best HMM Match : ABC_tran (HMM E-Value=6.7e-07)
Length = 210
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTHDPQ 482
++ARA+ V L D+P A+DSH G+ + I + T I+VTH Q
Sbjct: 111 NLARAVYFNADVYLLDDPLSAVDSHVGKHIFDKVIGPNGLLKSKTRILVTHGVQ 164
>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1266
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTHDPQ 482
+ARA+ +G + L D+P A+D+ G+ + I +L+ + I+ TH Q
Sbjct: 564 LARAVYSGADIFLLDDPLSAVDTQVGQHIFDKCICGELKSK--LRILATHQAQ 614
>SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 674
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTH 473
+ARA+ G + L D+P A+D++ G + I L+D+ I+VTH
Sbjct: 485 LARAVYADGDIYLLDDPLSAVDANVGRHLFQECICTYLKDKAR--ILVTH 532
>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 641
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTH 473
+ARA+ G + L D+P A+D++ G + I L+D+ I+VTH
Sbjct: 154 LARAVYADGDIYLLDDPLSAVDANVGRHLFQECICTYLKDKAR--ILVTH 201
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +3
Query: 255 ATAGAGRPYRVLSGTAFGWSATARHIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ 434
A +G G+ +GT FG SA ++ + G + ++PTG L G + + H
Sbjct: 800 AGSGFGQTSSSSTGTTFGQSAFSKPQENSTGTGTSSLFGNKPTGDLFKLQGRHLAVLRHS 859
Query: 435 ---LRDRGHTVIIVTH 473
L GH ++H
Sbjct: 860 VQLLHSVGHLHSALSH 875
>SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09)
Length = 562
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 2 SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAE 181
+GK+T +N++ A+ G+ VAG D+ T +H GF Q+ L +T E
Sbjct: 330 AGKTTTLNMMTAGIPASRGSVSVAGYDLQTETHKVF-----QHMGFCPQQDALFDDITLE 384
Query: 182 QNVEVPAVYAGL 217
+++ + A G+
Sbjct: 385 EHLTLYASVRGV 396
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAIL 428
IARAL+ +++ DE T ALD+ S + V A L
Sbjct: 266 IARALVKNPTLLILDEATSALDTESEKIVQAAL 298
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHS 404
IARAL+ ++L DE T ALD+ S
Sbjct: 818 IARALIRNPPILLLDEATSALDTES 842
>SB_44626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEV 416
++ARA+ V L D+P A+DSH G+ +
Sbjct: 13 NLARAVYFNADVYLLDDPLSAVDSHVGKHI 42
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEV 416
++ARA+ V L D+P A+DSH G+ +
Sbjct: 409 NLARAVYFNADVYLLDDPLSAVDSHVGKHI 438
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEV 416
+ARA+ + + L D+P A+D+H G+ +
Sbjct: 534 LARAVYSDADIFLLDDPLSAVDAHVGQHI 562
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 306 GWSATARHIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 482
G T +ARA+ + L D+P G +DS G + Q T I+VTH Q
Sbjct: 612 GGQRTRVALARAVYADADIYLLDDPLGTVDSKVGRHLFERCIQGILSKKTRILVTHQLQ 670
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +3
Query: 327 HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTHDPQ 482
++ARA+ + ++L D+P +LD++ G++V I L+DR ++VT Q
Sbjct: 240 NLARAVYSDADILLLDDPLISLDTNVGQQVFDECICGLLKDR--ICVLVTQQLQ 291
>SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11)
Length = 406
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 294 GTAFGWSATAR-HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVII 464
G A AR +ARAL + + D+P ALD V I LRD+ I+
Sbjct: 194 GVALSGGQRARVSLARALYLDADIYVLDDPLSALDFKVRRRVFQRCICELLRDK--LCIL 251
Query: 465 VTHD 476
VTHD
Sbjct: 252 VTHD 255
>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1636
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 357 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
QV++ DEPT +D + +L Q R T+++ TH
Sbjct: 539 QVVMLDEPTSGMDPSARRFTWELLQQERQH-RTILLTTH 576
>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1250
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 306 GWSATARHIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTHDP 479
G T +ARAL + L D+P ++D+ G + + L+D+ T ++VTH
Sbjct: 540 GGQRTRIGLARALYADADIYLLDDPLSSVDAKVGRHIFDECVCGILKDK--TRVLVTHQL 597
Query: 480 Q 482
Q
Sbjct: 598 Q 598
>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1308
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 294 GTAFGWSATAR-HIARALMNGGQVILADEPTGALDSHSGEEV--MAILHQLRDRGHTVII 464
G A AR +ARA+ ++ L D+ ALD G+ V I+ L+DR ++
Sbjct: 531 GVALSGGQRARVSLARAVYADAEIYLIDDTLSALDVRVGKHVYGQCIMGLLKDR--LRVL 588
Query: 465 VTHDPQ 482
VTH Q
Sbjct: 589 VTHQLQ 594
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 294 GTAFGWSATAR-HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVII 464
G A AR +ARAL + + D+P ALD V I LRD+ I+
Sbjct: 902 GIALSGGQRARVSLARALYLDADIYVLDDPLSALDFKVRRRVFQRCICELLRDK--LCIL 959
Query: 465 VTHD 476
VTHD
Sbjct: 960 VTHD 963
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
+ARA+ ++ L D+P +LDS G+++ Q I+VTH
Sbjct: 702 LARAVYADVEIYLLDDPFSSLDSKVGQDIFNECIQRALSNKLKILVTH 749
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = -2
Query: 435 ADAGSPSPLRQNGCPVRRLVHRQEL------PDH---RSSMPARCDALLLTTRKLCRIIL 283
A G+ +P+R GC ++ + RQE+ PD RS + +LT R L +
Sbjct: 327 AQHGNRAPIRTAGCREKKHLERQEMLWEKFRPDRLVSRSDFDSCSRYTVLTNRVLFNPPV 386
Query: 282 CTVFQPQ-PLRNSWARSSRCFRSR 214
+ QP P+++SW ++ ++R
Sbjct: 387 YSREQPSAPMKSSWPTAAELAQNR 410
>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 357 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 479
+V +AD P L +H+GE M L Q R + I+ P
Sbjct: 178 EVAVADSPVVRLQTHTGESAMTTLEQTGQRKLLMSIIKKLP 218
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 663 CKRPPCHRQRLVKTADKLPPARH----RVDNRFRPASNIHFFNG 544
C++P C ++R+ D+ P R+ VD R+ P H+ +G
Sbjct: 874 CEKPACMQERMYAMGDRAIPGRYVPKCTVDGRYSP-MQCHYSSG 916
>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
Length = 569
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 294 GTAFGWSATAR-HIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT 470
G A AR +ARA+ + + L D+P A+D+H L G + +
Sbjct: 249 GVALSGGQKARVTLARAVYSDADIYLLDDPLSAVDAHGKCIASGTYQDLCQAGIDFMTLC 308
Query: 471 HDPQ 482
+PQ
Sbjct: 309 EEPQ 312
>SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 330 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 473
+ARA+ + L D+P A+D+H + R TVI+ TH
Sbjct: 200 LARAVYQNKSIYLLDDPLAAVDAHVAAHLYKHCITGLLRHKTVILCTH 247
>SB_20224| Best HMM Match : ABC_tran (HMM E-Value=2.2e-36)
Length = 380
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 297 TAFGWSATARHIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVT 470
T G + +ARA+ + VIL D+P +D+ G V IL L T ++VT
Sbjct: 270 TLSGGQCSRISLARAVYSRASVILLDDPLSRVDAAVGRHVFDRCILKLLGQT--TRVVVT 327
Query: 471 H 473
H
Sbjct: 328 H 328
>SB_23594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 372 DEPTGALDSHSGEEVMAILHQLRDRGHTV 458
+ P LD+H+G+E+ AI+ +RD G TV
Sbjct: 37 ENPRHFLDTHTGKEIPAIVEHVRD-GCTV 64
>SB_3746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 294 GTAFGWSATAR-HIARALMNGGQVILADEPTGALDSHSGEEVM--AILHQLRDRGHTVII 464
G + AR ++ARA+ G + L D+P A+D+ G+ + I L ++ I+
Sbjct: 194 GASLSGGQKARVNLARAVYADGDIYLLDDPLSAVDAKVGKHIFENCITGVLENK--IRIL 251
Query: 465 VTHDPQ 482
VTH Q
Sbjct: 252 VTHQLQ 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,176,186
Number of Sequences: 59808
Number of extensions: 525159
Number of successful extensions: 1591
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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