Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0694.Seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 312 SATARHIARALMNGGQVILADEPTGALDSHSG 407
           S +A  +A A +N  Q   +  PTG+   HSG
Sbjct: 42  SLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 473  RSAVAAQAERVIKFATAKLCAILPPLK 553
            +S VA+ A  V    T  L  ILPP+K
Sbjct: 946  QSVVASSASNVTN-VTTNLTTILPPVK 971


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 87  PRWTPMRWRNCAASISALFSSVTICFRI 170
           P WT  +  NC+   SA    + +C R+
Sbjct: 106 PDWTWAKNENCSGITSAYKIEIDMCDRL 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,926
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)