Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0692.Seq
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    31   0.77 
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    30   2.3  
06_03_0754 + 24190778-24191284,24191735-24191784,24192311-241923...    28   7.1  

>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 464 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 315
           P  PT   PP   PKT+ + +  SSDG R +    + S   YD R L + R
Sbjct: 24  PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74


>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 251 RPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 427
           +PG  L + R G+ GL  + I +E  +S +HK   + SL   H     Y + +L   +D
Sbjct: 283 KPGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341


>06_03_0754 +
           24190778-24191284,24191735-24191784,24192311-24192383,
           24192577-24192717,24193635-24194039,24194215-24194319,
           24194635-24194775,24195330-24195533,24196206-24196292,
           24196689-24196800,24197972-24198015
          Length = 622

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 451 VGVVGKLTKLDHLEEVKVVKGFRREPAEGSLTCVVLCVICKYFI 582
           +G VGK+ K++H E V+++   +R        C+  C  C +++
Sbjct: 422 LGAVGKVVKVEHCERVQIIAASKR-------ICIANCRECIFYL 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,445,848
Number of Sequences: 37544
Number of extensions: 426947
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)