Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0692.Seq
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    31   0.90 
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    29   3.6  

>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 469 LTKLDHLEEVKVV--KGFRREPAEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFY 636
           L KL HL+       +  +   AE SLT   + +IC Y     I I A ++SI  ++Y
Sbjct: 230 LVKLAHLKSTTAAHTRSQKSHKAEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYY 287


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 508 KGFRREPAEGSLTCVVLCVICKYFIYLFIYIYACIHS 618
           + +RRE AE  L+ V L     +F+  F+ +YA + S
Sbjct: 370 ESYRREEAENVLSTVTLIAAMVFFLSFFLAMYAHVKS 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,724
Number of Sequences: 27780
Number of extensions: 352333
Number of successful extensions: 892
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)