Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0692.Seq
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    29   4.5  
At3g57890.1 68416.m06453 tubulin-specific chaperone C-related co...    28   6.0  

>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1322

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = -2

Query: 536 PSAGSLRKPXXXXXXXXXXSLVNFPT-------TPTAVKPPRVGPKTS 414
           PS GS+ KP          ++++FP        TP A+ PP   PKTS
Sbjct: 579 PSVGSVPKPSILVNRSENANMLSFPAGPASAGITPPAIVPPNGEPKTS 626


>At3g57890.1 68416.m06453 tubulin-specific chaperone C-related
           contains weak similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 573

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 451 VGVVGKLTKLDHLEEVKVVKGFRREPAEGSLTCVVLCVICKYFI 582
           +G VGK  K++H E V V+   +R        C+  C  C +F+
Sbjct: 371 LGAVGKAIKVEHCERVHVIVAAKR-------VCIANCRECVFFL 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,248
Number of Sequences: 28952
Number of extensions: 321260
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)