Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0691.Seq
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    52   8e-08
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.7  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   4.7  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   6.2  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   6.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.2  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 51.6 bits (118), Expect = 8e-08
 Identities = 22/65 (33%), Positives = 39/65 (60%)
 Frame = +2

Query: 263  EIARDYSPNWMTAVEILDDDTFLGAENSFNLFVCQKDSAATTDEDRQQMGYAGQFHLGDM 442
            E+ARDY P W T+VEIL +  +   E   N  +  +D+ +    DR+++ +  +F+LG++
Sbjct: 883  EVARDYHPLWATSVEILSERKYFVTEADGNAVILLRDNVSPQLSDRKKLRWYKKFYLGEL 942

Query: 443  VNVMR 457
            +N  R
Sbjct: 943  INKTR 947



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 20/74 (27%), Positives = 40/74 (54%)
 Frame = +3

Query: 18   AEKEIKGGCYSLVEFNGKLLAAINSMVRLFEWTSDKELRLECSHFNNIVALYLKAKGDFI 197
            AE +++G   +LV +   ++A IN+ V +FE+     + +  S       + +    D I
Sbjct: 804  AEHKVQGSVNTLVLYKHLIVAGINASVCIFEYEHGT-MHVRNSIRTPTYTIDISVNQDEI 862

Query: 198  LVGDLMRSMSLLQY 239
            +  DLM+S+++LQ+
Sbjct: 863  IAADLMKSITVLQF 876


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 99  RLFEWTSDKELRLECSHFNNIVALYLKAKGDFILV 203
           R   W S   LR+ CSH   ++  +L  KGD I+V
Sbjct: 233 RYIFWDSST-LRIICSHTYQVLLKHLITKGDKIMV 266


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 319 RHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLPR 471
           R ++   +Q+   + +KGQ G+H R     G        R G R + R PR
Sbjct: 427 RPLTASADQVLAAQQAKGQEGYHNRPNNNRGGHPRGGGNRGGYRQSNRQPR 477


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 427 ELPRVAHLLPVLVRG 383
           ELP++ H+LP+L RG
Sbjct: 505 ELPQIEHILPLLRRG 519


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +3

Query: 18  AEKEIKGGCYSLVEFNGKLLAAINSMVRLFEWTSDKELRLECSHFNNIVALYLKAKGDFI 197
           ++  I G C+S  ++    L +    ++LF++  +  L +  S+F  +  +     G FI
Sbjct: 321 SKSPINGFCFS-PDYQYLALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFI 379

Query: 198 LVG 206
            +G
Sbjct: 380 AIG 382


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 326  FLGAENSFNLFVCQKDSAATTDEDRQQMGYAGQFHLGDMVNVMRAGSLVAHHHHAD 493
            F+ A+ S NL +   D         +++   G FH+G+++  M        H +A+
Sbjct: 1269 FVVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMTILPKEKKHQNAE 1324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,059
Number of Sequences: 5004
Number of extensions: 41215
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)