Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0691.Seq
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23293| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11) 33 0.17
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_29097| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) 31 0.70
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 31 0.70
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28) 29 3.7
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 4.9
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40) 28 4.9
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 27 8.6
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 27 8.6
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0) 27 8.6
SB_23106| Best HMM Match : Glyco_tran_WecB (HMM E-Value=3.8) 27 8.6
SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_23293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +3
Query: 3 KLVQVAEKEIKGGCYSLVEFNGKLLAAINS 92
KLVQVAEKE+KG YSLVEFNGK+LA INS
Sbjct: 11 KLVQVAEKEVKGAVYSLVEFNGKVLAGINS 40
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 37.5 bits (83), Expect = 0.008
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 250 RALRGDSPRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVP 429
R R SP + + D RR SG P R S+ R R P R A P
Sbjct: 815 RDQRRRSPMRRRRSRDASPRRRRRSASG--SDSSPHRRSESPRDRRRRSPEHRRRREASP 872
Query: 430 PRRHGQRH---ARRLPRGASPPRRLRR 501
PRR +R+ RR R SPP R RR
Sbjct: 873 PRRDRKRYDSPPRRRRRSPSPPPRRRR 899
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 433 RRHGQRHARRLPRGASPPRRLRRAHDRP 516
RR H RR R ASPPRR R+ +D P
Sbjct: 858 RRRSPEHRRR--REASPPRRDRKRYDSP 883
>SB_46407| Best HMM Match : CPSF_A (HMM E-Value=3.8e-11)
Length = 242
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 48 SLVEFNGKLLAAINSMVRLFEWTSDKELR-LECSHFNNIVALYLKAKGDFILVGDLMRSM 224
+L F G+LLA I ++R+++ K LR E N + + + G I+V D+ S
Sbjct: 115 ALEPFQGRLLAGIGRLLRVYDIGKKKMLRKCENKKLPNFIC-NINSMGTRIVVSDIQESF 173
Query: 225 SLLQYK 242
++YK
Sbjct: 174 HFVKYK 179
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 32.3 bits (70), Expect = 0.30
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 286 QLDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRH--GQRHAR 459
QL GR SGR P R +R GR P+ G +P RR G+ +R
Sbjct: 339 QLPSGRLPSGRLPSGRLPSGWLPSRRLPSRRLPSGRLPSRRLPSGRLPSRRFPSGRLPSR 398
Query: 460 RLPRGASPPRRL 495
RLP G P R+L
Sbjct: 399 RLPSGRLPSRQL 410
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +1
Query: 268 SPRLQPQLDDGRGDSGRRHVSGR--REQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRR- 438
S RL + R RR SGR +L RL G R G+ P+ G +P RR
Sbjct: 80 SRRLPSRRLPSRRLPSRRLPSGRLPSRRLPSGRLPSG-RLPSGQLPSRRLPSGCLPSRRL 138
Query: 439 -HGQRHARRLPRGASPPRRL 495
G+ +RRLP G P RRL
Sbjct: 139 PSGRLPSRRLPSGCLPSRRL 158
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 418 GAVPPRRHGQRHARRLPRGASPPRRL 495
G +P RR GQ +RRLP G P RRL
Sbjct: 181 GCLPSRR-GQLPSRRLPSGRLPSRRL 205
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 286 QLDDGRGDSGR---RHVSGRR--EQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRR--HG 444
+L GR S R R + RR + P R +R GR P+ G +P R G
Sbjct: 62 RLPSGRLPSRRLPSRRLPSRRLPSRRLPSRRLPSRRLPSGRLPSRRLPSGRLPSGRLPSG 121
Query: 445 QRHARRLPRGASPPRRL 495
Q +RRLP G P RRL
Sbjct: 122 QLPSRRLPSGCLPSRRL 138
Score = 27.9 bits (59), Expect = 6.5
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 286 QLDDGRGDSGRRHVSGRREQLQPFRLSKGQ----RGHHGRGPAADGLRGAVPPRRHGQRH 453
+L GR SGR SGR L RL GQ R GR P+ G +P RR
Sbjct: 314 RLPSGRLPSGRLP-SGR---LPSRRLPSGQLPSGRLPSGRLPSGRLPSGWLPSRR---LP 366
Query: 454 ARRLPRGASPPRRL 495
+RRLP G P RRL
Sbjct: 367 SRRLPSGRLPSRRL 380
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 415 RGAVPPRR--HGQRHARRLPRGASPPRRL 495
RG +P RR G+ +RRLP G P RRL
Sbjct: 187 RGQLPSRRLPSGRLPSRRLPSGWLPSRRL 215
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 286 QLDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRR--HGQRHAR 459
+L GR SGR + P +R GR P+ G +P RR G+ +R
Sbjct: 229 RLPSGRLPSGRLPSRWLPSRRLPSGCLPSRRLPSGRLPS-----GRLPSRRLPSGRLPSR 283
Query: 460 RLPRGASPPRRL 495
RLP G P RRL
Sbjct: 284 RLPSGRLPSRRL 295
>SB_29097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 250 RALRGDSPRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVP 429
R D PR+ + G+S R ++ +Q+ P+RL+K GH+ R P D G +P
Sbjct: 26 RGTSRDGPRVASRQSLNLGESKLRPITA--DQM-PWRLTKSSNGHNQRSPRDDLNLGNIP 82
>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
Length = 184
Score = 31.1 bits (67), Expect = 0.70
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = +1
Query: 262 GDSPRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKG---QRGHHGRGPAADGLRGAVPP 432
G R P DGR DS + RE R +G + G RGP +RG P
Sbjct: 66 GRDSRGPPPPRDGR-DSRGTPIRDERESRPMEREPRGPLPRDGRDSRGPPPRDIRGTPPI 124
Query: 433 RRHGQRHARRLPRGASPP 486
R G + R RG + P
Sbjct: 125 REDGYANTSRGDRGPASP 142
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 31 SKGAATRWWSSTASYWPPSTAWCGCSSGRRIRSCGWSA 144
++G TR WSS S W + CG +R+RSC + A
Sbjct: 1743 ARGIRTRRWSSW-SLWSSCSRSCGNGVVKRVRSCNFPA 1779
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Frame = +1
Query: 271 PRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHG--RGPAADGLRGAVPPRRHG 444
PR Q D RG++ RR ++ R + R R A + A PP G
Sbjct: 143 PRQHAQAPDNRGNTHRREITAATRTGPDNRGNTRSRQATAATRSSARQPRQHAQPPDNRG 202
Query: 445 QRHARRLPRGASPPRRLRRAH-DRPVLLATVH 537
H R++ R R H P + +H
Sbjct: 203 NTHRRQITAATCAAARQPRQHAQEPAIRGNMH 234
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = +1
Query: 220 PCRYCNINRWRALRGDSPRLQPQLDDGRGDSGRRHVSG--RREQLQPFRLSKGQ--RGH- 384
P C R PR Q D RG++ R ++ R QP + ++ RG+
Sbjct: 241 PHHMCQTAAARRAGPRQPRQHAQAPDNRGNTRRCQITAATRAGARQPRQHAQEPAIRGNT 300
Query: 385 HGRGPAADGLRGAVPPRRHGQRHARR 462
H R AA GA PR+H Q A R
Sbjct: 301 HSRQTAAATRAGARQPRQHAQEPAIR 326
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1
Query: 271 PRLQPQLDDGRGDSGRRHV-----SGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPR 435
PR Q D RG++ RR + +G R+ Q + + H R A GA PR
Sbjct: 85 PRQHAQPPDNRGNTHRRQITAATRTGPRQPRQHAQPPDNRGNTHRRQITAATRAGARQPR 144
Query: 436 RHGQ 447
+H Q
Sbjct: 145 QHAQ 148
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = +1
Query: 289 LDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLP 468
L RG +G R +GR L+ G+ G G+ G +GA+ PR + +
Sbjct: 212 LKGARGATGPRGYTGRTG-LRGVPGKSGRNGTPGKN-GRPGAKGAMGPRGYRGLTGSKGA 269
Query: 469 RGASPPRRLRRAHDRP 516
RGA + LR A RP
Sbjct: 270 RGARGKQGLRGATGRP 285
>SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 701
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 250 RALRGDSPRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVP 429
R D PR+ + G+S R ++ +Q+ P+RL+K GH+ R P D G +P
Sbjct: 26 RGTSRDDPRVVSRQSLILGESKLRPITA--DQM-PWRLTKSSNGHNQRSPRDDLNLGNIP 82
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 82 PSTAWCGCSSGRRIRSCGWSAVTSTTSWLCT*RRKETSSWSGI*CAPCRY-CNINRWRAL 258
P+ A C SSG + SC V S +C + SG C PC CN R A
Sbjct: 921 PTCASCS-SSGPKCTSCIPGLVLSEKGGVCESECSKGRYKSGDACKPCHVSCNACRGPA- 978
Query: 259 RGDSPRLQP 285
+GD R P
Sbjct: 979 KGDCLRCNP 987
>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
Length = 951
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 307 DSGRRHVSGRREQLQPF-RLSKGQRGHHGRGPAADGLRGAVPP 432
D+G S R E L+PF R + H R A +G+ PP
Sbjct: 329 DTGSPRASFRSESLEPFKRQASKSESHKSRHSAGEGMPMKAPP 371
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +1
Query: 358 RLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLPRGASPPRR 492
R GHHG + +PP R R+ G +PP+R
Sbjct: 204 RTDDSGHGHHGNDDSFRPRTAPLPPAPESPRANPRITSGRAPPKR 248
>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
Length = 644
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = +1
Query: 58 SSTASYWPPSTAW------CGCSSGRRIRSCGWSAVTSTTSWLCT*RRKETS 195
SS+ SYW +W CG S R+IR C + W RR T+
Sbjct: 212 SSSTSYWAEWASWSDCSRECGGGSQRQIRKCIQNGPDKCPGWNYNDRRCNTN 263
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 54 VEFNGKLLAAINSMVRLFEWTSDKELRLECSHFNNIVALYLKAKGDFILVGDLMRSMS 227
V F+G L +S + F + +ELR + + ++ L K D++L D R++S
Sbjct: 3 VIFSGLLFVLDSSGLPGFSFKQKQELRSKITSNGGTISYILTKKTDYVLTSDGERTLS 60
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 338 ENSFNLFVCQKDSAATTDEDRQQMGYAGQFH 430
+NS N++ DS TD++ +G +G H
Sbjct: 319 DNSENVYASVSDSGENTDDEENSLGVSGNPH 349
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 250 RALRGDSPRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKGQRG 381
R +RG +D GRG+ GR GR ++ + L + RG
Sbjct: 160 RGVRGRGDERSRSMDLGRGERGRGIDFGRADRGRGINLGRSDRG 203
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 436 RHGQRHARRLPRGASPPRRLRRAHDRP 516
R H L RGA P RR+HD P
Sbjct: 401 RSSYEHVTNLARGARPVLLRRRSHDHP 427
>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
Length = 607
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 54 VEFNGKLLAAINS--MVRLFEWTSDKELRLECSHFNNIVALYLKAKGDFILVGDLMRSMS 227
+ F+ LL N+ ++ T + E+ + HF N + L +GDF+LV +L+ +
Sbjct: 184 MHFSNALLEGDNTGRLLAFHPKTGELEVLMSDLHFAN--GVQLSPEGDFVLVVELLTARI 241
Query: 228 LLQYKQME 251
L Y + E
Sbjct: 242 LRYYTRGE 249
>SB_23106| Best HMM Match : Glyco_tran_WecB (HMM E-Value=3.8)
Length = 240
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 215 ALHVATAI*TDGGRFEEIARDYSPNWMTAVEILDDDTFLGAENSFNLFVCQKDSAATTDE 394
ALHVA + T+G E+A SP+ +A+ D F+G N F+ +S A ++
Sbjct: 84 ALHVARNMNTNGVSMHEVAVADSPDGESAIP--DITKFVGG-NYLAKFLSNDESPALAEK 140
Query: 395 DR 400
+R
Sbjct: 141 ER 142
>SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 61 STASYWPPSTAWCGCSSGRRIRSCGWSAVTSTTSWLCT*RRKETS 195
+ +W +T CGC+S + W + TS L RR T+
Sbjct: 66 AVCGFWVTTTILCGCASVLNLCVVSWDRYVTVTSPLNYTRRMYTN 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,589,890
Number of Sequences: 59808
Number of extensions: 389112
Number of successful extensions: 1166
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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