Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0691.Seq
         (588 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    27   0.45 
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    27   0.60 
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.60 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   4.2  
DQ974173-1|ABJ52813.1|  553|Anopheles gambiae serpin 16 protein.       23   7.3  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    23   9.7  
AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosoma...    23   9.7  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 0.45
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 256 LRGD-SPRLQPQLDDGRGDSGR--RHVSGRREQLQPFRLSKGQRGHHG 390
           LRG+  P+ +P L    G SG   R      +QL+P +  KG++G +G
Sbjct: 626 LRGEPGPKGEPGLLGPPGPSGEPGRDAEIPMDQLKPIKGDKGEKGENG 673


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 0.60
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 170 QSHDVVEVTALQPQLLIRRPLEQPHHAV 87
           QS D+V+ T LQPQ  +    +QP  A+
Sbjct: 94  QSTDMVDYTQLQPQKFLLSQQQQPQSAL 121


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 0.60
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 430 PRRHGQRHARRLPRGASPPRRLRRAHDRP 516
           PRR   R   R P   SPP R R    RP
Sbjct: 257 PRRRSPRSGGRWPSCRSPPARRRSRSTRP 285


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 293 MTAVEILDDDTFLGAENSFNLFVCQKDSAATTDEDRQQMGYA 418
           +   E  +DDT  G E++  + V    SAA     RQ +GY+
Sbjct: 746 LARAESYEDDTD-GGESTTVVVVSDLHSAAARTPPRQSIGYS 786


>DQ974173-1|ABJ52813.1|  553|Anopheles gambiae serpin 16 protein.
          Length = 553

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 284 PNWMTAVEILDDDTFLGAENSFNLFVCQKDSAATTDEDRQQMGY 415
           P+W T+    DDD    A  +   F  QKD    T+    Q G+
Sbjct: 161 PHWRTSNPCYDDDDEEDAAAAAAEFPLQKDVIRVTNAVFVQEGF 204


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  IKGGCYSLVEFNGKLLAAINSMVRLFE 110
           ++GGC+ LV   G+LL  I+     FE
Sbjct: 296 MRGGCHVLVATPGRLLDFIDRGYVTFE 322


>AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosomal
           protein protein.
          Length = 56

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +1

Query: 37  GAATRWWSSTASYWPPSTAWCGCSSGR-RIRSCG 135
           G A  W+S    Y   S  W  CS+    IR  G
Sbjct: 2   GFANLWYSHPRKYGQGSRFWRACSNNHGMIRKYG 35


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,658
Number of Sequences: 2352
Number of extensions: 11893
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)