Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0691.Seq
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr... 97 1e-20
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 31 0.80
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 30 1.4
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 30 1.4
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 30 1.4
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 2.4
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 4.3
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 4.3
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 28 4.3
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 28 4.3
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 28 5.7
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 28 5.7
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 28 5.7
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 28 5.7
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical ... 27 7.5
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical protein
M18.5 protein.
Length = 1134
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +3
Query: 3 KLVQVAEKEIKGGCYSLVEFNGKLLAAINSMVRLFEWTSDKELRLECSHFNNIVALYLKA 182
KL +V E ++G ++ NGKL+AAINS +RLFEWT+DKELRLECS FN+++AL LK
Sbjct: 852 KLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTTDKELRLECSSFNHVIALDLKV 911
Query: 183 KGDFILVGDLMRSMSLLQYKQME 251
+ + V D+MRS+SLL Y+ +E
Sbjct: 912 MNEEVAVADVMRSVSLLSYRMLE 934
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 251 GRFEEIARDYSPNWMTAVEILDDDTFLGAENSFNLFVCQKD-SAATTDEDRQQMGYAGQF 427
G FEE+A+D++ WM E + ++ LG E NLF + D + TD+ R + G +
Sbjct: 935 GNFEEVAKDWNSQWMVTCEFITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYW 994
Query: 428 HLGDMVNVMRAGSLV 472
+LG++ VM +LV
Sbjct: 995 YLGELPKVMTRSTLV 1009
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 30.7 bits (66), Expect = 0.80
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 DSPRLQPQLDD-GRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRH 441
D+PR Q + R S S RR Q+ P R QR H R PPRR
Sbjct: 269 DAPRASYQTEQYARERSSSTTTSSRRRQVSPDRSE--QRRH----------RDEPPPRRA 316
Query: 442 GQRHARRLPRGASPPRRLRR 501
Q R RGASPP RR
Sbjct: 317 PQEQPSRR-RGASPPEPPRR 335
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 30.7 bits (66), Expect = 0.80
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 DSPRLQPQLDD-GRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRH 441
D+PR Q + R S S RR Q+ P R QR H R PPRR
Sbjct: 377 DAPRASYQTEQYARERSSSTTTSSRRRQVSPDRSE--QRRH----------RDEPPPRRA 424
Query: 442 GQRHARRLPRGASPPRRLRR 501
Q R RGASPP RR
Sbjct: 425 PQEQPSRR-RGASPPEPPRR 443
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Frame = +1
Query: 250 RALRGDSPRLQPQLD----DGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLR 417
R RG P +PQ D G G GRR G+ P G+RG GP G R
Sbjct: 347 RGGRGQGPDFEPQDDFPGRRGSGGPGRRGGRGQGPDFGPQDDFPGRRG--SGGPGGRGGR 404
Query: 418 GAVP---PRRHGQR 450
G P P R G R
Sbjct: 405 GQGPDFGPGRQGGR 418
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 418 GAVPPRRHGQRHARRLPRGASPPRRLR 498
G PP+ H Q H RR PR P R ++
Sbjct: 607 GPAPPQPHNQNHRRRQPRPELPVRLMQ 633
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 418 GAVPPRRHGQRHARRLPRGASPPRRLR 498
G PP+ H Q H RR PR P R ++
Sbjct: 607 GPAPPQPHNQNHRRRQPRPELPVRLMQ 633
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Frame = +1
Query: 295 DGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQ----RHARR 462
D RG GR GRR P R S+ R R P R PP R + R
Sbjct: 102 DERG--GRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNS 159
Query: 463 LPRGASPPRR 492
R SPP R
Sbjct: 160 RSRSRSPPPR 169
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 301 RGDSGRRHVSGR--REQLQPFRLSKGQRGHHGRG--PAADGLRGAVPPRRHGQRHARRLP 468
+G+SGR V G + +KG G +G P GL+G + R G + + LP
Sbjct: 173 KGESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRMGVRTSGVKGEKGLP 232
Query: 469 RGASPP 486
PP
Sbjct: 233 GPPGPP 238
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 301 RGDSGRRHVSGR--REQLQPFRLSKGQRGHHGRG--PAADGLRGAVPPRRHGQRHARRLP 468
+G+SGR V G + +KG G +G P GL+G + R G + + LP
Sbjct: 173 KGESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRMGVRTSGVKGEKGLP 232
Query: 469 RGASPP 486
PP
Sbjct: 233 GPPGPP 238
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 301 RGDSGRRHVSGR--REQLQPFRLSKGQRGHHGRG--PAADGLRGAVPPRRHGQRHARRLP 468
+G+SGR V G + +KG G +G P GL+G + R G + + LP
Sbjct: 173 KGESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRMGVRTSGVKGEKGLP 232
Query: 469 RGASPP 486
PP
Sbjct: 233 GPPGPP 238
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 310 SGRRHVSGRR-EQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLP 468
SGR +S R P S+G GR D RG VPP R + ++ P
Sbjct: 301 SGRAPLSNRPIHDRMPSTSSRGFDSERGRERDRDSGRGTVPPSREDRNRSQLWP 354
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 310 SGRRHVSGRR-EQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLP 468
SGR +S R P S+G GR D RG VPP R + ++ P
Sbjct: 301 SGRAPLSNRPIHDRMPSTSSRGFDSERGRERDRDSGRGTVPPSREDRNRSQLWP 354
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 439 HGQRHARRLPRGASPPRRL-RRAHDRPVLLATVHG 540
H +RH RRL ++L R AHDR + T+ G
Sbjct: 10 HRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRG 44
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +1
Query: 379 GHHGRGPAADGLRGAVPPRRHGQRHARRLPRGASPPRRLRRAHDRPVLLATVHGA 543
G HG GA P+R Q P PP AH L T HGA
Sbjct: 1093 GAHGASAPPPTSYGAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALPPTSHGA 1147
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +1
Query: 379 GHHGRGPAADGLRGAVPPRRHGQRHARRLPRGASPPRRLRRAHDRPVLLATVHGA 543
G HG GA P+R Q P PP AH L T HGA
Sbjct: 1113 GAHGASAPPPTSYGAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALPPTSHGA 1167
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 439 HGQRHARRLPRGASPPRRL-RRAHDRPVLLATVHG 540
H +RH RRL ++L R AHDR + T+ G
Sbjct: 10 HRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRG 44
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/75 (26%), Positives = 27/75 (36%)
Frame = +1
Query: 292 DDGRGDSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLPR 471
+D + GR+ +P R G+ GRG A+G R R HG R
Sbjct: 306 EDREPEKGRKQEHKESRDRRPARGDSGEVEKRGRGEKAEG-RDEQERRSHGSEERR--GG 362
Query: 472 GASPPRRLRRAHDRP 516
P R R +P
Sbjct: 363 SEEQPHREERGPQKP 377
>AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical
protein F39G3.3 protein.
Length = 520
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +1
Query: 307 DSGRRHVSGRREQLQPFRLSKGQRGHHGRGPAADGLRGAVPPRRHGQRHARRLPRGASPP 486
DSGR + + + P R + GR P +G P RRHG+ ARR + SP
Sbjct: 27 DSGRTNNRSHQGRRSPVRQT-------GRSPVRR--QGKSPIRRHGRSPARR--QEISPI 75
Query: 487 RRLRRA 504
R+ RR+
Sbjct: 76 RKTRRS 81
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 249 PSVYIAVATWSASDP-RPG*SLLSPSGTEPRCC*SDCTPAAAPYPTSTRTAAP 94
PS A T +A+ P RP P+ + PR S PA PT+TR AAP
Sbjct: 241 PSARPATTTGTATRPTRPA----VPAASAPRALTSRA-PAGPSRPTTTRNAAP 288
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 249 PSVYIAVATWSASDP-RPG*SLLSPSGTEPRCC*SDCTPAAAPYPTSTRTAAP 94
PS A T +A+ P RP P+ + PR S PA PT+TR AAP
Sbjct: 241 PSARPATTTGTATRPTRPA----VPAASAPRALTSRA-PAGPSRPTTTRNAAP 288
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 249 PSVYIAVATWSASDP-RPG*SLLSPSGTEPRCC*SDCTPAAAPYPTSTRTAAP 94
PS A T +A+ P RP P+ + PR S PA PT+TR AAP
Sbjct: 241 PSARPATTTGTATRPTRPA----VPAASAPRALTSRA-PAGPSRPTTTRNAAP 288
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 27.1 bits (57), Expect = 9.9
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Frame = +1
Query: 238 INRWRALRGDSPRLQPQLDDGRGDSGRRHVSGRREQLQPFRLSKGQRG--HHGRGPAADG 411
+N + D L+ + D R S ++ GR + P L + R + GP D
Sbjct: 82 LNNGNLVDRDGYTLKIRDPDCRAPSPPKYNPGRELRRYPDALVRRSRSPPRYHSGPREDR 141
Query: 412 LRGAVPPRRHGQRHARRLP-RGASP---PRRLRRAHDRP 516
PPR H +R P R SP P R ++ ++P
Sbjct: 142 FSDRNPPREHSPPPPQRFPARERSPAYIPGRSIQSAEKP 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,150
Number of Sequences: 27780
Number of extensions: 257238
Number of successful extensions: 955
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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