Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0691.Seq
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -1

Query: 189 LLSPSGTEPRCC*SDCTPAAAPYPTSTRTAAPCC*WRPVACR 64
           +L  S  E   C  D TP  A   +S     PC     + CR
Sbjct: 173 VLDDSKEEHPTCALDLTPTYAVVSSSISFYVPCIVMLGIYCR 214


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 427 ELPRVAHLLPVLVRGGRAVLLT 362
           E+P V + L VL + GR+V L+
Sbjct: 874 EVPEVPYGLKVLDKSGRSVQLS 895


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 257 FEEIARDYSPNWMTAVEILDDDTFLGAENSFNLFVC 364
           F +I R+    W T  E+  +   L AEN+  +  C
Sbjct: 313 FTQINRNGIACWDTNTELNPNTFILVAENNTTMVFC 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,302
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)