Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0689.Seq
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 254 SLWPQHNQL*LDHQSYHDFPYPSRRHLIQCPRKEESAFL 138
           +LWPQ   +     +   FPY S +  I   + E + FL
Sbjct: 70  ALWPQPTSVTKISSTLLKFPYRSIKFNIPDEKNEVNDFL 108


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 122 IWDLIKEKLILPFLDIELNVYD 187
           I D I ++LI+P +  E+N+++
Sbjct: 512 ILDNIYDQLIMPRIQAEVNIWN 533


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 194 MENRDKTDDQVTIDC 238
           +EN ++  DQ T DC
Sbjct: 567 IENVERASDQATYDC 581


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,204
Number of Sequences: 336
Number of extensions: 4088
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)