Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0689.Seq
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   137   2e-33
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   3.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   3.9  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    26   5.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   6.9  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   9.1  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    25   9.1  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  137 bits (331), Expect = 2e-33
 Identities = 61/86 (70%), Positives = 69/86 (80%)
 Frame = +1

Query: 259 NVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKP 438
           +VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  P
Sbjct: 78  DVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNP 137

Query: 439 IIIGRHAHADQYKATDFVVPGAGILK 516
           I IGRHA  DQYK+TD V  G G L+
Sbjct: 138 ICIGRHAFGDQYKSTDLVASGPGKLE 163



 Score =  113 bits (271), Expect = 3e-26
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 2/87 (2%)
 Frame = +3

Query: 510 LEIIFKPESGEAIKHV--VHEYKGAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLST 683
           LE+ F P+   + K    V+E+ G+GVA++M+NTD SI  FAHSSF+ AL +K PLYLST
Sbjct: 162 LELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLST 221

Query: 684 KNTILKKYDGRFKDIFQDIYDREYKKR 764
           KNTILKKYDGRFKD FQ++Y+ +YK++
Sbjct: 222 KNTILKKYDGRFKDTFQEVYESDYKQK 248



 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 36/56 (64%), Positives = 51/56 (91%)
 Frame = +2

Query: 83  PVVDILGDEMTRIIWDLIKEKLILPFLDIELNVYDLGMENRDKTDDQVTIDCAEAI 250
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L+ YDLG+E RDKT+DQ+T+D A+AI
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAI 74


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 531 ESGEAIKHVVHEYKGAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILK 701
           +SG+ + H V  Y+G  +  A+   D +  D      K  ++R Y    + +  I++
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVR 210


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -2

Query: 495 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 352
           D+K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 662 FSVQSKLE*RMSKVNNRCISVKHSQ--CYTCTLVLMNYMFYCLTRFRFE 522
           F+ ++ L+  + + NN   +++ S   C TC  ++ N  F+C   F F+
Sbjct: 35  FTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFD 83


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 244 GHKEYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICK 402
           GH ++   I C+   P +K ++ + ++ M ++    IR++   +V+ E  I K
Sbjct: 16  GHTKFVRCINCSRAVPKDKAIKRWNIRNMVET--AAIRDLSEASVYSEYAIPK 66


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 526 LKIISRYQHLGQQS 485
           LK++S+YQHL QQ+
Sbjct: 184 LKLVSQYQHLNQQA 197


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 449 PMMMGLSHPVTSLGIFLQIIASLKTVP 369
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 681 TKNTILKKYDGRFKDIF 731
           T+ T+L   DG+FKDIF
Sbjct: 414 TQETLLGLLDGKFKDIF 430


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 244 GHKEYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICK 402
           GH ++   I C+   P +K ++ + ++ M ++    IR++   +V+ E  I K
Sbjct: 16  GHVKFVRCINCSRAVPKDKAIKRWTIRNMVET--AAIRDLSEASVYSEYTIPK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,615
Number of Sequences: 5004
Number of extensions: 70031
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)