Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0689.Seq
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 173 1e-43
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 153 2e-37
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4) 28 7.3
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 28 7.3
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 28 7.3
SB_7874| Best HMM Match : PSI (HMM E-Value=8.4) 28 9.6
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 173 bits (422), Expect = 1e-43
Identities = 79/86 (91%), Positives = 82/86 (95%)
Frame = +1
Query: 250 KEYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGW 429
K+ +VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLV+ W
Sbjct: 29 KQCHVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVSPW 88
Query: 430 DKPIIIGRHAHADQYKATDFVVPGAG 507
KPIIIGRHAHADQYKATDFVVPG G
Sbjct: 89 TKPIIIGRHAHADQYKATDFVVPGPG 114
Score = 74.5 bits (175), Expect = 8e-14
Identities = 34/58 (58%), Positives = 46/58 (79%), Gaps = 2/58 (3%)
Frame = +3
Query: 510 LEIIFKP-ESGEAIKHVVHEYK-GAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYL 677
+EI++ P + GE IK+ V+E+K G GV + MFNTD SI FAHSSF++ALD+KYPLY+
Sbjct: 116 VEIVYSPADGGEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM 173
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +2
Query: 167 IELNVYDLGMENRDKTDDQVTIDCAEAIK 253
+EL YDL +ENRD T+DQVTID A AIK
Sbjct: 1 MELKSYDLSIENRDATNDQVTIDAAAAIK 29
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 153 bits (371), Expect = 2e-37
Identities = 67/86 (77%), Positives = 75/86 (87%)
Frame = +1
Query: 250 KEYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGW 429
++++VGIKCATITPDE RVEEFKLKKMWKSPNGTIRNILGGTVFR IICK +PRLV GW
Sbjct: 55 RKHHVGIKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGW 114
Query: 430 DKPIIIGRHAHADQYKATDFVVPGAG 507
+KPI+IGRHA DQY+A DF V G G
Sbjct: 115 EKPIVIGRHAFGDQYRARDFAVNGPG 140
Score = 111 bits (267), Expect = 6e-25
Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = +3
Query: 513 EIIFKPESGEAIKHVVHEYKGAG-VALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKN 689
EI F PESG + V E+ G G V + M+NTD +I DFAHS ++A+ ++ PLY+STKN
Sbjct: 143 EISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYMSTKN 202
Query: 690 TILKKYDGRFKDIFQDIYDREYKKRLR 770
TILKKYDGRFKDIFQDIY+REY+ + +
Sbjct: 203 TILKKYDGRFKDIFQDIYEREYESQFK 229
Score = 50.4 bits (115), Expect = 2e-06
Identities = 19/37 (51%), Positives = 32/37 (86%)
Frame = +2
Query: 143 KLILPFLDIELNVYDLGMENRDKTDDQVTIDCAEAIK 253
+LI P+LD+++ +DLG+E+RD T+D+VT++ AEAI+
Sbjct: 19 QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIR 55
>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 307 EEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 474
EE M P + +G + ++ + +N+ RL+ +D P+++ R H D +
Sbjct: 461 EELMNLNMKNGPQRLVSLDVGTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 516
>SB_17128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +3
Query: 603 TDASIIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKRL 767
TD +D +F + ++P+Y+ + + + + G D IYD K L
Sbjct: 330 TDDHTLDTDDKAFNLLMGSQHPVYIDSSLSDVSDHSGDISDFEHPIYDESLLKDL 384
>SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4)
Length = 238
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 651 LDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKRLR 770
L KY + TKN ++KK +D+ ++ D + RLR
Sbjct: 53 LKAKYEQVIETKNYLIKKLSKENEDLLTELRDPATRTRLR 92
>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 1414
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 44 SRHRYNMSKIKAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELNV 181
+R Y +K V+ + DEM + D+I + +L FL I L V
Sbjct: 40 ARDTYEKGALKKDHEVEEIDDEMRDCLNDIINDNCLLSFLLIRLRV 85
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 14 FI*SINCGCYSRHRYNMSKIKAGPVVDILGDEMTRIIW 127
+I S + CY + N+ + PVV +LGD +T + W
Sbjct: 10 YICSSSQECYGENSMNVQLPRQIPVVILLGDRLTFVPW 47
>SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)
Length = 275
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 304 VEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 474
+ F L K+P+ T+ G + ++ + +N+ RL+ +D P+++ R H D +
Sbjct: 37 LNRFPLNHDVKTPSFTV----GTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,940,203
Number of Sequences: 59808
Number of extensions: 509148
Number of successful extensions: 1084
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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