Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0689.Seq
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   3.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.3  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +2

Query: 110 MTRIIWDLIKEKLILPFLDIELNVYDLGMENRDKTDDQVTIDCAEAIKNTMWASNVR 280
           + R  +D +KE +I  F +IE +  D      DK++ ++ +     +  T+W +  +
Sbjct: 43  LPRTHYDHLKEIVIGGF-EIEKSEDDSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQ 98


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 148 QLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSVTGV 41
           QL++  +P+YS   I  +++N    ++  IV   G+
Sbjct: 269 QLYYPHVPEYSSSII-MELHNIEGTHYVKIVYYLGI 303


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 148 QLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSVTGV 41
           QL++  +P+YS   I  +++N    ++  IV   G+
Sbjct: 284 QLYYPHVPEYSSSII-MELHNIEGTHYVKIVYYLGI 318


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 668 SVLKH*EYNPQEIRWSFQRHLSRYL*Q 748
           + L H EY+   + +  QRH+  +L Q
Sbjct: 193 TTLSHAEYSMLLVYFHLQRHMGNFLIQ 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,637
Number of Sequences: 438
Number of extensions: 4999
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)