Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0686.Seq
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1027 + 25496311-25496811 44 1e-04
05_05_0308 - 23985165-23985556,23985624-23985699 36 0.047
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 33 0.33
05_05_0309 - 23987669-23988042,23989485-23989560 32 0.43
03_02_0817 + 11492699-11492774,11493605-11493978 32 0.43
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858 32 0.43
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 31 1.0
01_05_0049 + 17577358-17577993 31 1.3
11_06_0212 - 21319441-21319498,21319737-21319867,21319944-213200... 29 3.1
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 29 3.1
02_01_0738 + 5501894-5501978,5502130-5502369,5502880-5503079,550... 29 4.0
09_04_0397 + 17273013-17273570 29 5.3
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 29 5.3
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 29 5.3
12_01_0049 + 417325-419068,419667-420307 28 7.1
11_06_0304 - 22206490-22207065 28 7.1
11_01_0047 + 358370-360107,360713-361353 28 7.1
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 7.1
07_01_0086 + 672173-673603 28 9.3
07_01_0085 + 663694-665022 28 9.3
>12_02_1027 + 25496311-25496811
Length = 166
Score = 44.4 bits (100), Expect = 1e-04
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVG----EASGPINFTQLLTLFANRMS---- 410
D DG I +L SLG+ + +EL EM+ + +G I F + L L A + S
Sbjct: 26 DGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLALMARKASRGGE 85
Query: 411 --GGSDE-----DDVVINAFKTF--DEEGKIDSERLRHALMT 509
GG D+ D+ + AFK F D++G I + LRH +++
Sbjct: 86 NGGGGDDSGDAADEELREAFKVFDKDQDGLISAAELRHVMIS 127
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTL 392
D+DG+I +LR SLG +++E+++M+ EA G +NF + + +
Sbjct: 111 DQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRM 160
>05_05_0308 - 23985165-23985556,23985624-23985699
Length = 155
Score = 35.5 bits (78), Expect = 0.047
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAS---------GPINFTQLLTLFANRM 407
D+DG I +L SLG+ E E + +A+ G I+F L++ A +M
Sbjct: 23 DEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKM 82
Query: 408 SGGSDEDDVVINAFKTFDE--EGKIDSERLRHALMT 509
G+ E ++ FD+ G I +E+LR A+++
Sbjct: 83 RRGATEKELAA-CLDVFDDARSGVIPAEQLRQAMVS 117
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL-TLFAN 401
D++G I +LR +LG +++E+DEM+ EA G IN+ + + + AN
Sbjct: 96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAN 149
>05_05_0309 - 23987669-23988042,23989485-23989560
Length = 149
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL 386
D++G I +LR +LG +++E+DEM+ EA G IN+ + +
Sbjct: 96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>03_02_0817 + 11492699-11492774,11493605-11493978
Length = 149
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL 386
D++G I +LR +LG +++E+DEM+ EA G IN+ + +
Sbjct: 96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
Length = 146
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLL 386
D++G I +LR +LG +++E+DEM+ EA G IN+ + +
Sbjct: 96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMV----GEASGPINFTQLL--TLFANRMSGG 416
D DGI+ +L++ G +E E+ ++ G +++ + L +L RM+ G
Sbjct: 452 DNDGIVSYEELKSGIAKFGSHLAESEVQMLIEAVDTNGRGALDYGEFLAVSLHLQRMANG 511
Query: 417 SDEDDVVINAFKTFDEEGK--IDSERLRHALM-TGAT 518
+ + AF FD++G I+ E L+ AL+ GAT
Sbjct: 512 ----EHLRRAFLFFDKDGNGYIEPEELQEALVEDGAT 544
>01_05_0049 + 17577358-17577993
Length = 211
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = +3
Query: 261 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRM--SGGSD 422
DG + + +L + SLG S ELD ++ A +G I F++ + L A +
Sbjct: 77 DGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPY 136
Query: 423 EDDVVINAFKTFDEEGK--IDSERLRHAL 503
+D + F FD +G I + L H++
Sbjct: 137 SEDQIRRLFNIFDRDGNGFITAAELAHSM 165
>11_06_0212 -
21319441-21319498,21319737-21319867,21319944-21320033,
21320141-21320298,21320646-21320721
Length = 170
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA 356
D +G I +N+L SLG +E E+D+M+ A
Sbjct: 99 DDNGFISRNELSMVMASLGEEMTEDEIDDMMKAA 132
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -1
Query: 439 ITTSSSSEPPDMRLANRVKS*VKLMGPEASPTISSSSFSDASLPRESKVAR 287
+ S + PP + V+ +L+ P A+PT SSSS SD S SK AR
Sbjct: 131 VAPSFTPPPPILPAPQPVQPQQQLVSPVAAPTSSSSSSSDRS-SGSSKPAR 180
>02_01_0738 +
5501894-5501978,5502130-5502369,5502880-5503079,
5503653-5503827,5503923-5504038
Length = 271
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +3
Query: 255 DKDGIIGKNDL-RATFDSLGRLASE-----KELDEMVGEASGPINFTQLLTLFANRMSGG 416
+KDG + KN++ +A +++G S K +EM + +G + F + L F +
Sbjct: 201 NKDGYVSKNEMIQAINETIGGERSSGRIGMKRFEEMDWDKNGTVTFKEFLFAFTRWVGID 260
Query: 417 SDEDD 431
+EDD
Sbjct: 261 DNEDD 265
>09_04_0397 + 17273013-17273570
Length = 185
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 503 HDWGDKFSADEVHEAYDQMDIDDKGYIDTTKLIAMLTAS 619
H GD S ++ E ++D + G++D +AM+T S
Sbjct: 143 HKLGDSCSLEDCREMVKKIDRNRDGFVDMDDFMAMMTRS 181
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 647 RNDSISTIRSKTPAAVI 697
R D+ISTIRS TP AVI
Sbjct: 209 RQDAISTIRSMTPGAVI 225
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 419 RAAGHAVGE--QSQELSEVDGARSLTDHLIELLLGREPAQGVEGGAQVV 279
R+ G+ E S++ S+ S ++ELL GR P Q GG +VV
Sbjct: 532 RSLGYCAPEVTDSRKASQCSDVYSFGVFILELLTGRSPVQITGGGNEVV 580
>12_01_0049 + 417325-419068,419667-420307
Length = 794
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = -3
Query: 422 VRAAGHAVGEQSQELSEVDGARSLTDH------LIELLLGREPAQGVEG 294
V AA A+G ++ ELS++ A + TD ++ELL G+ PA+ G
Sbjct: 651 VLAAAGALGYRAPELSKLKKASAKTDVYSLGVIILELLTGKSPAETTNG 699
>11_06_0304 - 22206490-22207065
Length = 191
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 515 DKFSADEVHEAYDQMDIDDKGYIDTTKLIAML 610
D+ S DEV +A+ D D+ GYID L +L
Sbjct: 117 DEPSLDEVKQAFLVFDEDNDGYIDALDLYRVL 148
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = -3
Query: 422 VRAAGHAVGEQSQELSEVDGARSLTDH------LIELLLGREPAQGVEG 294
V AA A+G ++ ELS++ A + TD ++ELL G+ PA+ G
Sbjct: 649 VLAAAGALGYRAPELSKLKKASAKTDVYSLGVIILELLTGKSPAETTNG 697
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = -1
Query: 448 KALITTSSSSEPPDMRLANRVKS*VKLMGPEASPTISSSSFSDASLPRESKVARKSFLPM 269
K+ + SSS P + L + P A +SSS +A+ + + P
Sbjct: 6 KSAAASPSSSSSPSVALGLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPP 65
Query: 268 MPSLSGPLAGMPP*TQQPASVR 203
+PS + PLA PP P R
Sbjct: 66 LPSATPPLAASPPPPPPPPPPR 87
>07_01_0086 + 672173-673603
Length = 476
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 211 KQVAEFKEAFQLMDQTRMASS-ARTTCAPPSTPWAGSRPRRSSMRWSVR 354
+ + +F +AF LMD R+ ++ R APP R S+RW+VR
Sbjct: 115 RYIRDFCDAFGLMDAVRLNTTVTRVAMAPPR--------RDGSLRWAVR 155
>07_01_0085 + 663694-665022
Length = 442
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 211 KQVAEFKEAFQLMDQTRMASS-ARTTCAPPSTPWAGSRPRRSSMRWSVR 354
+ + +F +AF LMD R+ ++ R APP R S+RW+VR
Sbjct: 92 RYIRDFCDAFGLMDAVRLNTTVTRVAMAPPR--------RDGSLRWAVR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,902
Number of Sequences: 37544
Number of extensions: 294528
Number of successful extensions: 1193
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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