Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0686.Seq
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16337| Best HMM Match : efhand (HMM E-Value=3.7e-16) 97 2e-20
SB_866| Best HMM Match : efhand (HMM E-Value=7.4e-18) 76 4e-14
SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14) 73 3e-13
SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096) 56 3e-08
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 53 2e-07
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39) 53 2e-07
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26) 48 8e-06
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 44 1e-04
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 41 0.001
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08) 31 0.77
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 31 0.77
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12) 30 1.8
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45219| Best HMM Match : rve (HMM E-Value=3e-14) 29 5.5
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 28 9.5
>SB_16337| Best HMM Match : efhand (HMM E-Value=3.7e-16)
Length = 168
Score = 96.7 bits (230), Expect = 2e-20
Identities = 46/87 (52%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDV 434
++DG I KNDL+A FDSLG+L +++ +++M+ EASGPINFT LTLF ++S G+D +DV
Sbjct: 42 NRDGFIDKNDLKAVFDSLGKLVNDEYVEDMLNEASGPINFTMFLTLFGEKIS-GTDPEDV 100
Query: 435 VINAFKTFDEEGK--IDSERLRHALMT 509
+ NAF +FD EGK ID E+L+ M+
Sbjct: 101 IRNAFGSFDLEGKGSIDEEKLKRLCMS 127
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 145 QSSRGSRK-AKRTGSNXXSMFSQKQVAEFKEAFQLMDQTR 261
+ +GS+K A+R SN +MF Q Q+ EFKEAF ++DQ R
Sbjct: 4 KGKKGSKKKAQRATSNVFAMFEQSQIQEFKEAFNMIDQNR 43
>SB_866| Best HMM Match : efhand (HMM E-Value=7.4e-18)
Length = 171
Score = 75.8 bits (178), Expect = 4e-14
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 DGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVI 440
DG I K DL SLG+ ++ L+EMV E+ GPINFT LTLF +++ G+D +DV+
Sbjct: 45 DGFIDKEDLHDMLASLGKDPTDGYLEEMVKESPGPINFTMFLTLFGEKLN-GTDPEDVIR 103
Query: 441 NAFKTFDEE--GKIDSERLRHALMT 509
NAF FDE+ G+I + L+ A+M+
Sbjct: 104 NAFACFDEDGNGRIHEDLLKEAMMS 128
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 163 RKAKRTGSNXXSMFSQKQVAEFKEAFQLMDQ 255
++A R SN +MF Q Q+ EFKEAF ++DQ
Sbjct: 12 KRAHRATSNVFAMFDQSQIQEFKEAFNMIDQ 42
>SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14)
Length = 133
Score = 72.9 bits (171), Expect = 3e-13
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASG-PINFTQLLTLFANRMSGGSDEDD 431
++DG I K DL+ + SLG+ +++ LD+M+ EASG INFT LTLF +++ G+D +D
Sbjct: 43 NRDGFIDKEDLKDMYASLGKSPNDQFLDDMIEEASGSTINFTMFLTLFGEKLN-GTDPED 101
Query: 432 VVINAFKTFDEEG 470
V+ NAF FDEEG
Sbjct: 102 VIKNAFGCFDEEG 114
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 163 RKAKRTGSNXXSMFSQKQVAEFKEAFQLMDQTR 261
++A+R SN +MF Q Q+ EFKEAF ++DQ R
Sbjct: 12 KRAQRATSNVFAMFDQTQIQEFKEAFNMIDQNR 44
>SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)
Length = 322
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +3
Query: 279 NDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVINAFKTF 458
+DLR T SLG+ + +E+D+M+ E NFT L++F RM+ +D +D+++ AF
Sbjct: 178 DDLRGTLSSLGQKPTFEEIDDMM-EGKPSFNFTSFLSMFGLRMA-NTDPEDIILRAFSCL 235
Query: 459 DE--EGKIDSERLRHALMT 509
D+ +GK+ ++ LR L T
Sbjct: 236 DDGGDGKLSAKMLRELLTT 254
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSD 422
D DG I +L SLG+ +E EL +M+ E +G I+F + LT+ A +M +D
Sbjct: 12 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKN-TD 70
Query: 423 EDDVVINAFKTFDEEGK--IDSERLRHAL 503
++ + AF+ FD++G I + LRH +
Sbjct: 71 SEEEIREAFRVFDKDGNGFISAAELRHVM 99
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQ 380
D +G I +LR +LG +++E+DEM+ EA G +N+ +
Sbjct: 85 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDE 130
>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 250
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSD 422
D DG I +L SLG+ +E EL +M+ E +G I+F + LT+ A +M +D
Sbjct: 12 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKN-TD 70
Query: 423 EDDVVINAFKTFDEEGK--IDSERLRHAL 503
++ + AF+ FD++G I + LRH +
Sbjct: 71 SEEEIREAFRVFDKDGNGFISAAELRHVM 99
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQ 380
D +G I +LR +LG +++E+DEM+ EA G +N+ +
Sbjct: 85 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDE 130
>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSD 422
D DG I +L SLG+ +E EL +M+ E +G I+F + LT+ A +M +D
Sbjct: 23 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD-TD 81
Query: 423 EDDVVINAFKTFDEEGK--IDSERLRHAL 503
++ + AF+ FD++G I + LRH +
Sbjct: 82 SEEEIREAFRVFDKDGNGFISAAELRHVM 110
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA 356
D +G I +LR +LG +++E+DEM+ EA
Sbjct: 96 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129
>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
Length = 213
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Frame = +3
Query: 303 SLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDEDDVVINAFKTFDEEG 470
SLG+ +E EL +M+ E +G I+F + LT+ A +M G D D+ + AF+ FD++G
Sbjct: 3 SLGQNPTEAELQDMINEVDADGNGIIDFPEFLTMMAKKM-GEQDSDEEIREAFRVFDKDG 61
Query: 471 K--IDSERLRHAL 503
I + LRH +
Sbjct: 62 NGFISAAELRHVM 74
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +3
Query: 255 DKDG--IIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGG 416
DKDG I ++L SLG+ +E+EL +M+ E +G I+F + L + A ++
Sbjct: 300 DKDGGGSISSSELAHVMRSLGQNPTEQELKDMIAEVDQDDNGEIDFPEFLQMVAKKIKE- 358
Query: 417 SDEDDVVINAFKTFDE--EGKIDSERLR 494
+D ++ + +AFK FD+ +G I S L+
Sbjct: 359 TDTEEEIQDAFKVFDKNGDGMISSSELK 386
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 261 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA 356
DG+I ++L+ +LG ++ E+DEM+ EA
Sbjct: 377 DGMISSSELKLVMSNLGERLTDDEVDEMIREA 408
>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +3
Query: 255 DKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSD 422
D G + +L +LG +E+E+ EMV E +G ++F + + L N+ +
Sbjct: 160 DGSGHVTTKELHKAMRTLGFNPTEEEIQEMVNEVDYDGNGVLDFNEFVDLMENQKKPDEE 219
Query: 423 EDDVVINAFKTF--DEEGKIDSERLRHAL 503
E D+ INAF F D++G I++ LR L
Sbjct: 220 EQDL-INAFHVFDSDDKGYIEASELRDLL 247
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 231 GGIPANGPDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLLTLFA 398
GG D G I +L SLG+ S++EL +M+ E +G ++F + L +
Sbjct: 4 GGFSLFDKDGSGTISNEELEVVMKSLGQNPSDEELQQMIQEVDADGNGEVDFEEFLAMMK 63
Query: 399 NRMSGGSDEDDVVINAFKTFDEEG 470
+M D + + AF+ FD G
Sbjct: 64 KQMQ-HRDAEAEMREAFRVFDRNG 86
>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
Length = 407
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 151 SRGSRKAKRTGSNXXSMFSQKQVAEFKEAFQLMDQTRMASSARTTCAPPSTPWAG 315
+R +K SN QK V E + + Q+ M S + C+PPST G
Sbjct: 86 TRNEKKEALRSSNSPQKKEQKMVTEEGKTKSVKQQSSMFSPSAMLCSPPSTSTQG 140
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 151 SRGSRKAKRTGSNXXSMFSQKQVAEFKEAFQLMDQTRMASSARTTCAPPSTPWAG 315
+R +K SN QK V E + + Q+ M S + C+PPST G
Sbjct: 164 TRNEKKEALRSSNSPQKKEQKMVTEEGKTKSVKQQSSMFSPSAMLCSPPSTSTQG 218
>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
Length = 288
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 342 MVGEASGPINFTQLLTLFANRMSGGSDEDDVVINA-FKTFDEEGKIDSERLRHALMTGA 515
M+GE P+N T+ L N+M G ++N K G S +++AL GA
Sbjct: 166 MIGEFETPMNETEFLAFVKNKMQCGGIRHSALLNKNIKKVAVLGGSGSYAIKNALQAGA 224
>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 503 HDWGDKFSADEVHEAYDQMDIDDKGYI 583
+D D +SA+E + YD D DD Y+
Sbjct: 24 YDESDSYSAEEFFDNYDDDDFDDSDYL 50
>SB_45219| Best HMM Match : rve (HMM E-Value=3e-14)
Length = 360
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 235 AFQLMDQTRMASSARTTCAPPSTPWAGSRPRR 330
A +L +QTR S + C PPS P S +R
Sbjct: 87 ALKLYNQTRPKQSLKCRCGPPSCPTTTSPAKR 118
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +3
Query: 264 GIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLL 386
G++ + LRA D+LGR+A+ +E+ E + E +SG ++F + L
Sbjct: 164 GVLCRILLRAIPDTLGRMATTEEIKEAMLEVDVDSSGTVDFFEFL 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,084,569
Number of Sequences: 59808
Number of extensions: 290478
Number of successful extensions: 1145
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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