Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0686.Seq
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   1.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 240 PANGPDKDGIIGKNDLRATFD 302
           P+ G DKD +I    L   FD
Sbjct: 19  PSGGADKDAVITSQQLEVNFD 39


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 447 FKTFDEEGKIDSERLRHALMTGAT 518
           F+  +E  KIDS   R  +  GAT
Sbjct: 371 FRCLEENNKIDSRVTRFVVAVGAT 394


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 512 GDKFSADEVHEAYDQMDID 568
           G+ FS D+    YD +DID
Sbjct: 16  GEVFSEDKYTTKYDNVDID 34


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 685  WRLRPYSR-DGIITGFTAFLLLSAGG 611
            W   P S  +G+ITG+   ++ S GG
Sbjct: 1102 WMSPPLSAANGVITGYKVIVIPSGGG 1127



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 434 DVIFVRAAGHAVGE 393
           D+I+VRA G AVG+
Sbjct: 34  DIIWVRADGSAVGD 47


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 512 GDKFSADEVHEAYDQMDID 568
           G+ FS D+    YD +DID
Sbjct: 16  GEVFSEDKYTTKYDNVDID 34


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 417 SDEDDVVINAFKTFDEEGK 473
           ++ D+ ++NAFKT  +E K
Sbjct: 128 TERDNHLVNAFKTLTQEPK 146


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 349 PTISSSSFSDASLPRESKVARKSFLPMMPSLSGPL 245
           P I + S      P  +       +P MPS++GP+
Sbjct: 418 PPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPI 452



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 252 PDKDGIIGKNDLRATFD 302
           PDK+ ++  NDL +  D
Sbjct: 641 PDKEHVLAHNDLMSPLD 657


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 284 VVLADDAILVWSISWNASLNSATCFCENI 198
           V L +D +L W   ++ +L   TC  + +
Sbjct: 98  VTLQNDEVLDWKKIFDINLLGLTCMIQEV 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,131
Number of Sequences: 438
Number of extensions: 2235
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)