Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0685.Seq
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.29 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.1  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 451 SLSRQNCAECSYHGSRVLQYSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 606
           SL R+     +   + VL++ Q +A K A  +   N   II+EPT     YG
Sbjct: 332 SLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 493 SRVLQYSQRQATKDAGTISGLNVLRIINEPTAAAI---AYGLDKKGTGERNVLI 645
           +RVL  +++Q     GT+   NV R+ ++ T   +   A G   +GT E  V++
Sbjct: 528 TRVLPINRKQKVFPNGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMV 581


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 482 VITVPAYFNTLK-DKPQKMQV 541
           +I VPAY NT K D P +  +
Sbjct: 203 IINVPAYLNTYKGDFPTETDI 223


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 60 PFCIFNQSCYLFLKQ 16
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,835
Number of Sequences: 438
Number of extensions: 4412
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)