Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0684.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    33   0.034
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    30   0.32 
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    29   0.98 
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    29   0.98 
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    28   1.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   3.0  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 308 QIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLL 457
           Q+F  YG + N +L +  GF  P+N  D++++ + I    P ++ K ++L
Sbjct: 229 QLFNNYGPKGNEELLMGYGFCLPDNPFDTVTLKVAIHPDLPHKDQKAAIL 278



 Score = 29.5 bits (63), Expect = 0.56
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 27  SIARQYAYFYKKIHTLDIPVLKKLQEVFTFDSYRWAVSTVMTR--QNNIRLSEADVT-AF 197
           S A++  + +K  +   + +     E FTFD Y W+ +   +R   +N+   +++ T   
Sbjct: 130 SAAQERLHIWKHEYQEALSLHPSPTERFTFDLYIWSATVFSSRCFSSNLIYKDSESTPIL 189

Query: 198 IPLWDMCNHE 227
           +PL D  NH+
Sbjct: 190 LPLIDSLNHK 199


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 305 EQIFIFYGARPNADLFLHNGFVYPNNQHDSLSV 403
           EQIF+ YG   N  LF   GF   NN + S+ +
Sbjct: 217 EQIFLCYGPHGNDKLFTEYGFCLSNNPNISIQL 249


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 36  RQYAYFYKKIHTLDIPVLKK--LQEVFTFDSYRWAVSTVMTRQNNIRLSEADV 188
           R+Y       H +D+PV+K+   Q V   D Y   ++T  T ++++RL E ++
Sbjct: 69  RKYEDMSPSTHNMDVPVVKRDEYQLVNIDDGYLNLMTTDGTTKDDVRLPEGEL 121


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 36  RQYAYFYKKIHTLDIPVLKK--LQEVFTFDSYRWAVSTVMTRQNNIRLSEADV 188
           R+Y       H +D+PV+K+   Q V   D Y   ++T  T ++++RL E ++
Sbjct: 69  RKYEDMSPSTHNMDVPVVKRDEYQLVNIDDGYLNLMTTDGTTKDDVRLPEGEL 121


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 ALRDFKTDEQIFIFYGARPNADLFLHNGF 367
           A RD K  EQ++  YG   N++LF   GF
Sbjct: 280 ATRDIKKGEQLWNTYGELDNSELFRKYGF 308


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 107  NFLKFLQHWYIECVNLFIKVCILSGYTSVKF 15
            N   FL  +  E V+ + K CI SG+T  +F
Sbjct: 1544 NISAFLPEFTSEAVSDYTKECIASGFTMARF 1574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,665
Number of Sequences: 5004
Number of extensions: 59462
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)