Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0684.Seq
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0094 - 14552970-14553182,14553275-14553679,14553780-145539... 46 3e-05
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 39 0.004
01_07_0373 + 43136075-43136134,43136223-43136338,43136437-431365... 39 0.004
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 38 0.009
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344... 37 0.020
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 33 0.33
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519... 33 0.33
11_01_0633 - 5075565-5075707,5076777-5076930,5077021-5077182,507... 32 0.44
08_01_0895 - 8806113-8806220,8806642-8806712,8806969-8807155,880... 31 1.0
03_02_0304 - 7273008-7273257,7273367-7273524,7273668-7273734,727... 29 4.1
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424... 28 9.5
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 28 9.5
>09_04_0094 -
14552970-14553182,14553275-14553679,14553780-14553902,
14554156-14554367,14554486-14554514,14554661-14555166
Length = 495
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 296 KTDEQIFIFYGA-RPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGL 472
K+ EQI+I Y + NA+L L GF N+ D+ ++TL IS DP + K+ + G+
Sbjct: 286 KSGEQIYIQYDLDKSNAELALDYGFTESNSSRDAYTLTLEISESDPFYDDKLDIAELNGM 345
Query: 473 GCVAHYSL 496
G A++ +
Sbjct: 346 GETAYFDI 353
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFV--YPNNQHDSLSVTLGISSGDPLREIKMSLLT 460
R ++ EQ+FI YG + + +L L GFV N +DS+ + + ++ D + K+ L
Sbjct: 312 RSYQPGEQVFISYGKKSSGELLLSYGFVPKEGTNPNDSVELLVSLNKSDKCYKEKLQALK 371
Query: 461 KLGL 472
+ GL
Sbjct: 372 RNGL 375
>01_07_0373 +
43136075-43136134,43136223-43136338,43136437-43136500,
43136602-43136712,43136996-43137103,43137202-43137271,
43138019-43138086,43138225-43138260,43138455-43138538,
43138870-43139000,43139123-43139147
Length = 290
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2
Query: 272 ECYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMS 451
E A R++ EQ+ I YG NA L L+ GF N +D + + + DPL + K+
Sbjct: 199 EIIADRNYAVGEQVMIRYGKYSNATLALNFGFTLARNIYDQALIRIDMPVQDPLYKKKLD 258
Query: 452 LLTK 463
+ K
Sbjct: 259 IWQK 262
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKL 466
R +K E I ++ G +PN+ L L+ GF+ +N +D + + ++ DP + K + +
Sbjct: 312 RPYKAGEPIIVWCGPQPNSRLLLNYGFIDEDNPYDRIVIEASLNIEDPQFQEKRMVAQRN 371
Query: 467 G 469
G
Sbjct: 372 G 372
>07_03_0328 +
16833423-16833541,16833638-16833791,16834449-16834490,
16834964-16835104,16835471-16835728,16835857-16836492
Length = 449
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 242 NGLQHELNRGECYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGI 415
+G ++N YA + ++ EQ+ + YG N +L H GF+ N ++ + + L +
Sbjct: 216 DGGYEDVNEYRLYARKRYRKGEQVLLAYGTYTNLELLEHYGFLLGENPNEKIYIPLDL 273
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 296 KTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTL 409
K + +I I YG + N +L GFV NN D L VTL
Sbjct: 788 KAETEICINYGNKGNEELLYLYGFVIDNNPDDYLMVTL 825
>01_06_1547 -
38150814-38151488,38151608-38151666,38151774-38151919,
38152078-38152274,38152542-38152920,38153000-38153031
Length = 495
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 272 ECYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGI 415
E +RD E++F YG NA L GF +N +D +++ L +
Sbjct: 259 EMIVVRDVNEGEEVFNTYGTMGNAALLHRYGFTEMDNSYDIVNIDLAL 306
>11_01_0633 -
5075565-5075707,5076777-5076930,5077021-5077182,
5077369-5078271
Length = 453
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 724 RCRFSCMKRVAVCTASVDTCGLDGRYRRLP 635
RC+FS RV +C S+ + LD YRR P
Sbjct: 202 RCKFSQTSRVRICVPSLVSLRLDDFYRRTP 231
>08_01_0895 -
8806113-8806220,8806642-8806712,8806969-8807155,
8807473-8807603,8807679-8807811,8808124-8808242,
8808751-8809039,8809150-8809272,8809300-8809323,
8810016-8810072,8810148-8810255
Length = 449
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGIS 418
R K EQ F+ YG P + L GF+ +N +D + + L S
Sbjct: 352 RPCKAGEQCFLSYGKHPGSHLITFYGFLPRDNPYDVIPLDLDTS 395
>03_02_0304 -
7273008-7273257,7273367-7273524,7273668-7273734,
7274461-7274645,7274801-7275215,7275311-7275418,
7275557-7275792,7275888-7275914
Length = 481
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 688 CTASVDTCGLDGRYRRLPPQRCSAPTTQGRLEDFDWTI-SLVPPD 557
C+ D C R R P QR S T + RL W + + PPD
Sbjct: 59 CSPDADACRSVKRPRPRPQQRASNKTLKYRLFASTWNVGGVAPPD 103
>06_01_0590 -
4240260-4240883,4241063-4242238,4242691-4242760,
4243739-4243803
Length = 644
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 135 VSTVMTRQNNIRLSEADVTAFIPLWDMCNHEHGEIRTDYNTN*TEANATRSAILKPTNKS 314
VS+V + + + LS F LW GE+ + + + + RS+ P +KS
Sbjct: 572 VSSVANQSSRLSLSSRSRRMFDRLWAGGKPPGGEVVSKSSDTSGSSQSPRSSAKPPASKS 631
Query: 315 SYSTER 332
S S+ R
Sbjct: 632 SSSSSR 637
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 561 GGTNEMVQSKSSKRPCVVGAEQR*GGKRRYRPSSPHVSTD-AVQTATRFIQEKRQRKSHR 737
GG + SK S+ P V E K++ + S + D A++T +EK+++K H
Sbjct: 506 GGKKKKKTSKESEEPPVATTEGEKKEKKKKKKSDSQDAEDVAMETEESGKKEKKKKKKHH 565
Query: 738 N 740
+
Sbjct: 566 S 566
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,392
Number of Sequences: 37544
Number of extensions: 382506
Number of successful extensions: 915
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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