Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0684.Seq
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33778| Best HMM Match : SET (HMM E-Value=0.62)                      62   4e-10
SB_45876| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_59762| Best HMM Match : Vicilin_N (HMM E-Value=4)                   31   1.0  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)         31   1.4  
SB_10733| Best HMM Match : Peptidase_A16_N (HMM E-Value=3.4)           31   1.4  
SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)           30   2.4  
SB_56645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)                 29   5.5  
SB_51399| Best HMM Match : HCaRG (HMM E-Value=7.6e-30)                 28   7.3  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_6985| Best HMM Match : PSD2 (HMM E-Value=2)                         28   7.3  
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        28   7.3  
SB_25557| Best HMM Match : HECT (HMM E-Value=0)                        28   9.6  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 28   9.6  

>SB_33778| Best HMM Match : SET (HMM E-Value=0.62)
          Length = 646

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/64 (42%), Positives = 39/64 (60%)
 Frame = +2

Query: 281 ALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLT 460
           A +  +  +Q+FIFYG R NAD   HNGFVY   + D +++ LG+S  D L  +K  +L 
Sbjct: 305 AFKPTRAGDQVFIFYGRRNNADRLFHNGFVYTEAEEDWVNIQLGVSKNDRLYAMKAQILA 364

Query: 461 KLGL 472
            +GL
Sbjct: 365 MVGL 368



 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
 Frame = +3

Query: 126 RWAVSTVMTRQNNIRLSEAD-VTAFIPLWDMCNHEHGEIRTDYNTN*TEANATRSAILKP 302
           RWAVSTVMTRQN++++S  + V A IP+WDMCNH +G   T ++ +  E    +S   KP
Sbjct: 252 RWAVSTVMTRQNDVKVSSNETVKALIPMWDMCNHCNGPFTTGFDDSTKE---VKSLAFKP 308

Query: 303 T 305
           T
Sbjct: 309 T 309



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 508 DPIGPELLAFIRIFNMNQEE 567
           +PI PEL  F+R+F+MN +E
Sbjct: 382 EPISPELRIFLRVFSMNTDE 401


>SB_45876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 272 ECYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVT 406
           E   + +++   Q+FI YG   N  LFL  GFV P N H+S   T
Sbjct: 13  EINVITEYQKGTQVFINYGPHDNTRLFLEYGFVLPRNVHNSYRFT 57


>SB_59762| Best HMM Match : Vicilin_N (HMM E-Value=4)
          Length = 206

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 507 RSNRTRTIGVYKDLQYESGGTNEMVQSKSSKRPCVVGAEQR*GGKRRYRPSSPHVSTDAV 686
           R +R R I   K LQ   GG  +  + + S+RP V+  EQR   ++R    +        
Sbjct: 64  RISRKRIITARKHLQRTRGGEEQNNEEERSRRPRVLTEEQRARQRQRDLVLTEEQRVRKR 123

Query: 687 QTAT--RFIQEKRQRKSHRN 740
           QT++  R   E+R RK  ++
Sbjct: 124 QTSSEYRLSGEQRVRKKQKD 143


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 531  GVYKDLQYESGGT--NEMVQSKSSKRPCVVGAEQR*GGKRRYRPSSPHVSTDAVQTATRF 704
            GV    Q++ G     +      ++ P +   EQ  GG+   RP++ H + DA Q A+  
Sbjct: 1859 GVSSGAQHQQGADVPKQATNETPNRHPEIKPQEQHLGGEGLQRPTNRHEAVDATQNASSE 1918

Query: 705  IQ 710
            +Q
Sbjct: 1919 VQ 1920


>SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)
          Length = 1290

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 639 KRRYRPSSPHVSTDAVQTATRFIQEKRQRKSHRNRSCYQREILKQ 773
           +R Y   +  ++  A+Q A +  ++KR  +SH  +  YQ+E+L+Q
Sbjct: 34  ERHYNSITNGINAAAIQYAQKKEEDKRCHESHLKQLKYQQELLQQ 78


>SB_10733| Best HMM Match : Peptidase_A16_N (HMM E-Value=3.4)
          Length = 197

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 639 KRRYRPSSPHVSTDAVQTATRFIQEKRQRKSHRNRSCYQREILKQ 773
           +R Y   +  ++  A+Q A +  ++KR  +SH  +  YQ+E+L+Q
Sbjct: 34  ERHYNSITNGINAAAIQYAQKEEEDKRCHESHLKQLKYQQELLQQ 78


>SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)
          Length = 558

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 718 RFSCMKRVAVCTASVDTCGLDGRYRRLPPQRCSAPTTQGRLEDFDW 581
           RF C  R  V T   D   L  R   +PP  C  P++    +  DW
Sbjct: 9   RFGCPSRSNVLTLKFDKSSLCPRKVVIPPSSCKRPSSTLSKKGSDW 54


>SB_56645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 278 YALRDFKTDEQIFI--FYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMS 451
           YA +D K D  + +    GA+  A    H G +  N   +   V  G SSGD        
Sbjct: 3   YARKDLKADIVLDMATLTGAQGIATGRYHGGLLTNNEDWEQACVRAGRSSGD-------- 54

Query: 452 LLTKLGLGCVAHYSLFKR 505
           LLT +  G ++HY  F R
Sbjct: 55  LLTTIETGDISHYGNFIR 72


>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
          Length = 388

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 718 RFSCMKRVAVCTASVDTCGLDGRYRRLPPQRCSAPTTQGRLEDFDW 581
           RF C  R  + T   D   L  R   +PP  C  P++    +  DW
Sbjct: 9   RFGCPSRSNMLTLKFDKSSLCPRKVVIPPSSCKRPSSTLSKKGSDW 54


>SB_51399| Best HMM Match : HCaRG (HMM E-Value=7.6e-30)
          Length = 189

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 622 SAPTTQGRLEDFDWTISLVPPDSY*RSL*TPIVLVRLDL 506
           +A  T  +L+DFDW + +V       S+  P+V +  D+
Sbjct: 114 TAGITSAQLKDFDWKLKMVLASDKLASIRKPLVTIDFDI 152


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 588 KSSKRPCVVGAEQR*GGKRRYRPSSPHVSTDAVQTATRFIQEKRQRKSHRNRSCYQR 758
           +S+K   +V  E R GG+   RP+S   +  + + A   +  +RQRK  R+  C ++
Sbjct: 627 RSTKEQVIVSREVR-GGEDNERPASFSDTKQSTRNAVNGMDSERQRK-RRSSGCQRQ 681


>SB_6985| Best HMM Match : PSD2 (HMM E-Value=2)
          Length = 254

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 439 DKNVSAHEARAGLRRALLSVQTTDPIGPELLAFIRI 546
           + NVS    R  LR+ LL+V  T+P+    L  ++I
Sbjct: 205 NSNVSTLPKRENLRKILLNVAETEPVSKSYLPIMKI 240


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 447  CLCSRS*GWAASRTTLCSNDRSNRTRTIGVYKDLQ-YESG 563
            CL     G A+S+  L    + NR + IG+ +D++ YE G
Sbjct: 2004 CLAKNVFGSASSQAKLLVKKKGNRPQPIGMIRDIEGYEGG 2043


>SB_25557| Best HMM Match : HECT (HMM E-Value=0)
          Length = 454

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 766 KISRW*HDRFLCDFRCRFSCMKRVAVCT---ASVDTCGL 659
           K+  +   RF+CD     +CM+R+AVC+    S++ C +
Sbjct: 413 KVPAYERQRFVCDHS--LACMQRIAVCSRRYVSLERCAV 449


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 359 NGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVAHYSLFKRQIQSDQN 526
           NG +    + DS +  + +S  DP  ++    LT L    ++        IQSDQ+
Sbjct: 205 NGGLVKEKEEDSYNNEISLSEEDPTDDLSSQCLTGLSAMPISRADTQLNSIQSDQS 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,850,518
Number of Sequences: 59808
Number of extensions: 462606
Number of successful extensions: 1185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)