Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0684.Seq
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set (trithora...    41   9e-04
AC087232-2|AAK09076.4|  401|Caenorhabditis elegans Hypothetical ...    37   0.018
Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote...    28   8.5  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 27
           protein.
          Length = 502

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 290 DFKTDEQIFIFYGARPNADLFLHNGFV-YPNNQHDSLSVTLGISSGDPLREIKMSLLTK 463
           D K   ++ IFYG R   +  LHNGFV   + + D L + +GI   D   + K  L+ K
Sbjct: 333 DVKAGNEVTIFYGCRSKGEHLLHNGFVPIYHGKFDVLKLKIGIPKTDKTLDAKKKLIQK 391



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 27/103 (26%)
 Frame = +3

Query: 3   ESSLKLYRSIARQYAYFYKKI----------------HTLDIPVLKKLQ---EVFTFDSY 125
           E ++  YR+I+RQ+ YF   I                + ++ P+   +      FT   Y
Sbjct: 201 EEAILFYRTISRQFCYFLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLY 260

Query: 126 RWAVSTVMTRQNNI----RLSEAD----VTAFIPLWDMCNHEH 230
            WAV  V TR N +    ++ E      + A IP+ DM NHE+
Sbjct: 261 FWAVGVVTTRVNMVPSENQVGEDGNPVIIPALIPVLDMANHEN 303


>AC087232-2|AAK09076.4|  401|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.6 protein.
          Length = 401

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 254 HELNRGE--CYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNN 382
           HE   G     A R  +  EQIF+ YGA  NA L +  GF  P+N
Sbjct: 208 HEKRNGRYVVQAKRQIQEGEQIFVCYGAHDNARLLVEYGFTLPHN 252


>Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical
           protein W07A12.7 protein.
          Length = 502

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 105 VFTFDSYRWAVSTVMTRQNNIRLSEADVTAFIP-LWDMCNHEHGEIRTDYNTN*TEANAT 281
           VF+  S + +V  ++T +++ +L   D+  F+  LW M NH   E R D       A+A 
Sbjct: 71  VFSCLSLKRSVKELLTERSS-KLDVLDIFRFVAILWVMLNHTGSEGRIDILDRLPSADAF 129

Query: 282 RSAI 293
           +SA+
Sbjct: 130 KSAM 133


>Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical
           protein F49B2.1 protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 326 GARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKL 466
           G+R + +LFL +     N++ D LS TL    GD L+ IK  +  +L
Sbjct: 461 GSR-DINLFLKHWIAGSNDELDHLSFTLSSEEGDVLQGIKFQISNEL 506


>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
           protein F45E10.1a protein.
          Length = 1583

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
           protein F45E10.1d protein.
          Length = 1520

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 520 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 557


>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
           protein F45E10.1c protein.
          Length = 1654

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
           protein F45E10.1a protein.
          Length = 1583

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical
           protein F45E10.1d protein.
          Length = 1520

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 520 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 557


>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
           protein F45E10.1c protein.
          Length = 1654

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
           protein F45E10.1e protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 234 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 271


>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
           UNC-53 protein.
          Length = 1583

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 YPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVA 484
           YP+N  DS S++ GIS  + L +I    L+ + +  VA
Sbjct: 654 YPDNFEDSSSLSSGISDNNELDDISTDDLSGVDMATVA 691


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
            protein R155.2 protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 646  DIDRRAHTYLLTRCKLLLASYKKNDNENHTETDHVT 753
            ++D R    L+ + +++L  YKK  N+N    ++VT
Sbjct: 966  EMDLRVANPLIEKTRVILKGYKKQFNDNFLHANYVT 1001


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,816
Number of Sequences: 27780
Number of extensions: 341692
Number of successful extensions: 934
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)