Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0684.Seq
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          26   0.45 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.6  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 652 DRRAHTYLLTRCKLL 696
           D R HTYL+TR KLL
Sbjct: 125 DARPHTYLVTRQKLL 139


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 693 ATRFIQEKRQRKSHRNRSCY 752
           A R + E+R+ +SH    CY
Sbjct: 229 ARRIVLEERRAQSHLEAHCY 248


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = +3

Query: 87  LKKLQEVFTFDSYRWAVSTVMTRQNNIRLSEADVTAFIPLW 209
           + +LQ+ F  + Y WA+   M+    I        +   +W
Sbjct: 314 INELQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMW 354


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = +3

Query: 87  LKKLQEVFTFDSYRWAVSTVMTRQNNIRLSEADVTAFIPLW 209
           + +LQ+ F  + Y WA+   M+    I        +   +W
Sbjct: 282 INELQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMW 322


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 682 ASVDTCGLDGRYRRLPPQRCSAP 614
           ASV    L G Y  L PQ C  P
Sbjct: 469 ASVVAAALTGTYPTLLPQWCLPP 491


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 613 TTQGRLEDFDWTISLVPPDSY 551
           T++ RL + DW  ++  PDS+
Sbjct: 104 TSEYRLLEVDWLKNMWRPDSF 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,091
Number of Sequences: 438
Number of extensions: 4280
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)