Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0684.Seq
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55080.1 68416.m06117 SET domain-containing protein low simil... 55 6e-08
At3g07670.1 68416.m00919 SET domain-containing protein similar t... 43 2e-04
At5g17240.1 68418.m02020 SET domain-containing protein contains ... 42 6e-04
At5g14260.3 68418.m01668 SET domain-containing protein low simil... 40 0.002
At5g14260.2 68418.m01667 SET domain-containing protein low simil... 40 0.002
At5g14260.1 68418.m01666 SET domain-containing protein low simil... 40 0.002
At1g14030.1 68414.m01658 ribulose-1,5 bisphosphate carboxylase o... 37 0.013
At2g45980.1 68415.m05716 expressed protein 36 0.030
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 34 0.091
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 28 6.0
At2g40920.1 68415.m05050 F-box family protein contains Pfam PF00... 28 6.0
At1g24610.1 68414.m03096 SET domain-containing protein low simil... 28 6.0
At5g66890.1 68418.m08432 disease resistance protein (CC-NBS-LRR ... 28 7.9
>At3g55080.1 68416.m06117 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 463
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 LQHELNR-GECYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSG 424
L+ E N+ E A R++ +++FI YG NA L L GF +P N HD + + + + +
Sbjct: 241 LRDEDNQLSEVTADRNYSPGDEVFIKYGEFSNATLMLDFGFTFPYNIHDEVQIQMDVPND 300
Query: 425 DPLREIKMSLL 457
DPLR +K+ LL
Sbjct: 301 DPLRNMKLGLL 311
>At3g07670.1 68416.m00919 SET domain-containing protein similar to
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit N-methyltransferase I [Spinacia oleracea]
GI:3403236; contains Pfam profile PF00856: SET domain
Length = 504
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFV--YPNNQHDSLSVTLGISSGDPLREIKMSLLT 460
R ++ EQ+FI YG + N +L L GFV N DS+ + L + D E K+ L
Sbjct: 292 RPYQPGEQVFISYGNKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEEKLDALK 351
Query: 461 KLGL 472
K GL
Sbjct: 352 KHGL 355
>At5g17240.1 68418.m02020 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 491
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 230 RRDKNGLQHELNRGECYALRDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTL 409
R G + ++N YA R+++ EQ+ + YG N +L H GF+ N +D + + L
Sbjct: 246 RLTDGGFEEDVNAYCLYARRNYQLGEQVLLCYGTYTNLELLEHYGFMLEENSNDKVFIPL 305
Query: 410 GIS 418
S
Sbjct: 306 ETS 308
>At5g14260.3 68418.m01668 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKL 466
R +K + I ++ G +PNA L L+ GFV +N +D + V +++ DP + K + +
Sbjct: 317 RPYKAGDPIVVWCGPQPNAKLLLNYGFVDEDNPYDRVIVEAALNTEDPQYQDKRMVAQRN 376
Query: 467 G 469
G
Sbjct: 377 G 377
>At5g14260.2 68418.m01667 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKL 466
R +K + I ++ G +PNA L L+ GFV +N +D + V +++ DP + K + +
Sbjct: 317 RPYKAGDPIVVWCGPQPNAKLLLNYGFVDEDNPYDRVIVEAALNTEDPQYQDKRMVAQRN 376
Query: 467 G 469
G
Sbjct: 377 G 377
>At5g14260.1 68418.m01666 SET domain-containing protein low
similarity to ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea] GI:3403236; contains Pfam profile
PF00856: SET domain
Length = 514
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 287 RDFKTDEQIFIFYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKL 466
R +K + I ++ G +PNA L L+ GFV +N +D + V +++ DP + K + +
Sbjct: 317 RPYKAGDPIVVWCGPQPNAKLLLNYGFVDEDNPYDRVIVEAALNTEDPQYQDKRMVAQRN 376
Query: 467 G 469
G
Sbjct: 377 G 377
>At1g14030.1 68414.m01658 ribulose-1,5 bisphosphate carboxylase
oxygenase large subunit N-methyltransferase, putative
strong similarity to SP|P94026 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
([Ribulose- bisphosphate-carboxylase]-lysine
N-methyltransferase) {Nicotiana tabacum}; contains Pfam
profile PF00856: SET domain; Rare GC intron splice site
at 49572 is inferred from protein alignment and is not
confirmed experimentally
Length = 482
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 296 KTDEQIFIFYGA-RPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGL 472
K EQ++I Y + NA+L L GFV N + +S ++T+ I DP K+ + +
Sbjct: 272 KAGEQVYIQYDLNKSNAELALDYGFVESNPKRNSYTLTIEIPESDPFFGDKLDIAESNKM 331
Query: 473 GCVAHYSLFKRQ 508
G ++ + Q
Sbjct: 332 GETGYFDIVDGQ 343
>At2g45980.1 68415.m05716 expressed protein
Length = 256
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 320 FYGARPNADLFLHNGFVYPNNQHDSLSVTLGISSGDPLREIKMSLLTKLGLGCVAHYSLF 499
+YGA + DL++ FV+P ++H++L + + + ++ + +L GL HY
Sbjct: 44 YYGAETSRDLYMSEHFVFPPSEHENLPIDESLFVAEQRKDGRDLMLEGQGLSDQFHYEAG 103
Query: 500 KRQ 508
Q
Sbjct: 104 NNQ 106
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.3 bits (75), Expect = 0.091
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +3
Query: 501 NDRSNRTRTIGVYKDLQYESGGTNEMVQSKSSKRPCVVGAEQR*GGKRRYRPSSPHVSTD 680
N+RS R+ + Q E GG E V S+S K E+ GGKR S D
Sbjct: 28 NERSERSYRKREGGERQGEEGGEEERVSSRSKKSR--GDGEENGGGKRDRERERHRSSRD 85
Query: 681 AVQTATRFIQEKRQRKSHRNRSCYQRE 761
+ + + R ++S R RS +R+
Sbjct: 86 KDRERDKVREGSRDKESDRERSSKERD 112
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
chaperonin family
Length = 1756
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 69 TLDIPVLKKLQEVFTFDSYRW 131
T+DI ++ KL+ + FDSY W
Sbjct: 1090 TIDILLINKLRRLIIFDSYAW 1110
>At2g40920.1 68415.m05050 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein family,
AtFBX8 (GP:20197464) {Arabidopsis
thaliana}|502017|gb|T20576.1|T20576
Length = 436
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 105 VFTFDSYRWAVSTVMTRQNNIRLSEADVTAFIPLWDMCNHEHGEIRTDYNTN*TEANATR 284
V +FD R T++ I L E V A + D+ + G+I Y+TN + +
Sbjct: 279 VVSFD-IRSEQLTIIPVPREIHLDEV-VPAVTMMADLIEYG-GKIAIFYHTNLKDEGSAD 335
Query: 285 SAILKPTNKSSYSTERVLTQTC 350
+L+ T KS +S + ++ Q C
Sbjct: 336 LWVLEDTGKSEWSKKTLVLQPC 357
>At1g24610.1 68414.m03096 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 476
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Frame = +3
Query: 129 WAVSTVMTR----QNNIRL---SEADVTAFIPLWDMCNH 224
W +S V TR N +L S DV +PL DMCNH
Sbjct: 204 WTMSAVSTRAFRLHGNKKLQGGSSDDVPMMLPLIDMCNH 242
>At5g66890.1 68418.m08432 disease resistance protein (CC-NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 415
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 51 FYKKIHTLDIPVLKKLQEVFTFDSYRWAVSTVMTRQNNIRLSEADVTAFIPLW-----DM 215
F K L+I LKKL+++ D YR + + N+ + + TAF LW +M
Sbjct: 338 FQLKNLPLEIGKLKKLEKISMKDCYRCELPDSVKNLENLEVKCDEDTAF--LWKILKPEM 395
Query: 216 CNHEHGEIRTDYNTN 260
N E +T++N N
Sbjct: 396 KNLTITEEKTEHNLN 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,546,354
Number of Sequences: 28952
Number of extensions: 312775
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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