Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0682.Seq
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    30   0.41 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    26   5.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.8  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 119 TSNFAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKL 289
           T  F +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 735 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 598
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 557 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 658
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 95  VLRRSKNFTSNFAIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTK--YSSSIFSRFEHS 268
           VL+ +K   +   + +HP +P   YL   K  +I   +YS +      Y+S I    EH 
Sbjct: 176 VLKIAKVKPTIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKLIEHK 235

Query: 269 NLFKV 283
            L  +
Sbjct: 236 TLVDI 240


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 184 FQNSEVMINRDNWVYSYCEVRGEI 113
           F  +E +++   +  SYC+VRG I
Sbjct: 267 FVETETILDSSKYCVSYCQVRGSI 290


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 92  FVLRRSKNFTSNFAIRIHPVIPINHYLGVLK-TNKIEPRSYSIIPCTKY 235
           F ++ S + +++ +I  HP +PINH     K  N+    +   +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 741 LRLPWLSRVTGNQGSIPEREPEKRLP 664
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,704
Number of Sequences: 5004
Number of extensions: 58861
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)