Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0681.Seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 427 DLLVSEFLS--EVGHDVAQLGRGDEAVAVLVE 338
           DL  S+ L   E+ HDVA  G+G E V++ V+
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKG-ELVSLTVQ 193


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 170 DEVARTEPHRSRTSRHDQ*SRRGRKRHDNFPEFLTMMAR 286
           DE  R + H +     +  +   R+ HDN P FL+  +R
Sbjct: 95  DEEKRYQEHPNGKILRELQTDYDRRLHDNSPSFLSDHSR 133


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 317  FLPRYPCPSSCAPSLSRTRESY 252
            F P Y  P++CAP   +    Y
Sbjct: 1803 FSPEYDDPANCAPEEDQYGSQY 1824


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 299 CPSSCAPSLSRTRESYRAVSVR 234
           CP  C P L +++ S + V+ R
Sbjct: 347 CPLHCKPELGQSQSSPKFVARR 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,995
Number of Sequences: 438
Number of extensions: 2479
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)