Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0680.Seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    31   0.22 
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    30   0.29 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   1.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   3.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.7  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    26   6.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   8.3  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 703 ISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFA-ISLYTVLVAQSFGLMIGAV 527
           IS  IVDLP   ++ +VFS ++Y ++        F  +F  + +    ++  F  + G +
Sbjct: 617 ISSLIVDLPFRFINISVFSIVLYFLTNLKRTAGGFWTYFLFLFIGATCMSAFFRSLAGIM 676

Query: 526 FNVVNGPSL 500
            NV +  +L
Sbjct: 677 PNVESASAL 685


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 319 HIGASLQSSFG--LSNPYMAPTNPSNPYRKYETYDPQYKYGGRSRRVTPKP 465
           H G+S Q  F   +S+P   P   S+ +R   +  P  K+GG S   TPKP
Sbjct: 55  HFGSSQQRRFAPEVSSPLAEPYESSSSFRLSLSSPPSSKFGGPSFG-TPKP 104


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 362 RIWRPRILPIRTASTRRMTPSTSTAGGRVESLRSPRTSSSVP-TK*GQGRTVNNIEDGSD 538
           R+W  +  P R  +    TPS S++   + S  S  + SS+P T       + ++   SD
Sbjct: 94  RLWSFKNFPFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSD 153

Query: 539 H 541
           H
Sbjct: 154 H 154


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 389 IRTASTRRMTPSTSTAGGRVESLRSPRTSSSVPT 490
           + T ++   TP+ S +   VES+   +T++SVP+
Sbjct: 182 VTTTTSATATPTASASSNAVESVFVTKTAASVPS 215


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 83  DFRHKKN-HIINLPTIILSIYKWLEQIRCLYRTAF 184
           +F  +KN   + LP ++ ++ K +EQ+ C Y  +F
Sbjct: 781 EFEGQKNLWQVILPNVVPNLLKLVEQLHCCYEPSF 815


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 224 TKTKIVSARTSTRICPET*LLQRGTVLGIYKGI 322
           TK ++ + RT T       ++ RG +LG Y+G+
Sbjct: 35  TKVQMAANRTQTMAQAIKAIMSRGGILGFYQGL 67


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -1

Query: 418 GHTSRTCGTDWK-DSWAPYTGWKD---RNWTAMKHLYAFINTQDSSSLK 284
           GH+S  CG  W+ D     +G  D   + W A   +  F  T  ++++K
Sbjct: 302 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,938
Number of Sequences: 5004
Number of extensions: 57822
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)