Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0680.Seq
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 31 1.2
SB_5904| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087) 30 2.2
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05) 29 2.9
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 29 5.0
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_130| Best HMM Match : rve (HMM E-Value=0.0043) 28 6.7
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0) 28 8.8
SB_31129| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_17898| Best HMM Match : Entericidin (HMM E-Value=4.3) 28 8.8
SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 28 8.8
>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/66 (46%), Positives = 43/66 (65%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFG 545
YSL SYY++ T+ D+P I+ ++ IVY M+ QP R+ F AI++ T LVAQS G
Sbjct: 624 YSLKSYYLAKTMADVPFQILFPLIYCTIVYFMTEQPHEGLRYTQFVAITILTCLVAQSIG 683
Query: 544 LMIGAV 527
L+IG V
Sbjct: 684 LLIGTV 689
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/83 (33%), Positives = 45/83 (54%)
Frame = -3
Query: 506 FLGPTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFVGAIYGLERPKLDCNEA 327
++ P +P+++F+GF V +P Y+ W +YVSY RY EG V +IYG R L C +
Sbjct: 698 YVAPVTGIPVLLFSGFFVNFDTIPNYMQWLTYVSYARYSWEGTVLSIYGNNRGPLHCKQE 757
Query: 326 PICLYKYPRQFLSEVAMSPDRFW 258
C++K L + + F+
Sbjct: 758 R-CIFKNSDDVLDAMDVEESAFY 779
>SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 781
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = -1
Query: 712 SYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFGLMIG 533
SY++++ I +PI ++S V+ +++Y +AI R G +FA G +I
Sbjct: 619 SYFLAVDIAQVPIMLISPLVYLSLLYA-----LAIPRVGAWFA--------CVGSGYLIS 665
Query: 532 AVFNVVNGPSLALL 491
VFN N +++
Sbjct: 666 IVFNTRNAQMASVI 679
>SB_5904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 712 SYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMF-FAISLYTVLVAQSFGLMI 536
SY++++ +V LPI +V+ ++ +++Y + +A F M+ + +L G I
Sbjct: 195 SYFLAVNVVQLPILVVTPMMYLSLLYPL----VAPRGFLMYHYIATLAAQFACTGMGYAI 250
Query: 535 GAVFNVVN 512
+FN N
Sbjct: 251 STLFNPKN 258
>SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087)
Length = 405
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 712 SYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMF-FAISLYTVLVAQSFGLMI 536
SY++++ +V LPI +V+ ++ +++Y + +A F M+ + +L G I
Sbjct: 233 SYFLAVNVVQLPILVVTPMMYLSLLYPL----VAPRGFLMYHYIATLAAQFACTGMGYAI 288
Query: 535 GAVFNVVN 512
+FN N
Sbjct: 289 STLFNPKN 296
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 371 RPRILPIRTASTRRMTPSTSTAGGRVESLRSPRTSSSVPTK*GQGRTVNNIEDGSDHEAE 550
RP ++PI + S + P+T+T + P+ S P + R N ++ SD E++
Sbjct: 326 RPPVVPISSHSAAPIAPTTTTKTTKSGLPEPPKVPSGKPLAMARFRVPFNNQETSDEESD 385
>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
Length = 964
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = -1
Query: 358 WKDRNWTAMKHLYAFINTQDSSSLK*LCLRTDSGGRSSAH--DLRLRVKDC-SFLPSKME 188
WKDR+ ++M IN D+SSL L L T + G +S H + K C +F K
Sbjct: 373 WKDRSCSSMILTVEAINNFDASSL--LQLTTTNIGVASVHVFPAAFQGKTCATFFDEKSN 430
Query: 187 VKR--CSIKTSNL 155
VK CS+ N+
Sbjct: 431 VKSTLCSLPWRNV 443
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 224 TKTKIVSAR-TSTRICPET*LLQRGTVLGIYKGI*VLHCSPVSVFPTRIWRPRILPIRTA 400
T+T+I R T TRI +R T+ I + + + PTRI +PRI R
Sbjct: 440 TRTRIAKTRITPTRITRPRITRKRITLTRITQ----TRITRTRIIPTRITKPRITRTRIT 495
Query: 401 STRRMTPSTSTAGGRVE 451
TR T+G R++
Sbjct: 496 KTRITRKIPITSGCRLQ 512
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSF 548
Y L +YY + +LP+ + F + Y M G +++ F ++ L T + AQ +
Sbjct: 224 YRLSAYYFAKLFSELPLVVCQPIGFMLVAYWMCGLNESVA-FLTHLSVLLLTSITAQYY 281
>SB_130| Best HMM Match : rve (HMM E-Value=0.0043)
Length = 297
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 253 RSSAHDLRLRVKDCSFLPSKMEVKRCSIK 167
R H L L++ C F+ ++E KRC I+
Sbjct: 133 RLQVHSLCLQITKCEFVLREVEYKRCKIE 161
>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
Length = 1048
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3
Query: 413 YVSYLRYGLEGFVGAI 366
YVSY YGL GFVG I
Sbjct: 81 YVSYALYGLAGFVGFI 96
>SB_31129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -3
Query: 503 LGPTLSVPMMMFAGFGVTL---RDLPPYLYWGS 414
LGPT S +M+F G+G T+ D Y +WGS
Sbjct: 81 LGPTHSAVLMVFCGYGFTVAGTNDNTLY-FWGS 112
>SB_17898| Best HMM Match : Entericidin (HMM E-Value=4.3)
Length = 532
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 503 LGPTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGL 387
L T + + + +G ++ PY + S+V+Y RYGL
Sbjct: 156 LKSTFAGVLNLLSGKNFPKNEIMPYFFASSHVNYARYGL 194
>SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 377 RILPIRTASTRRMTPSTSTAGGRVESLRSPRTSSSVPTK 493
R+ P+RT T R+TP + + LR+P T+ P +
Sbjct: 158 RLTPMRTPLTTRLTPMRTPLTTCLTPLRTPLTTRLTPLR 196
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 415 HTSRTCGTDWK-DSWAPYTGWKDRNWTAMKHLYAFIN 308
H + + DW ++W+ Y W NW+ + + N
Sbjct: 33 HNNWSTYNDWSHNNWSTYNNWSHNNWSTYNNWSTYNN 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,814,890
Number of Sequences: 59808
Number of extensions: 448732
Number of successful extensions: 1382
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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