Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0680.Seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical ... 52 4e-07
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 52 4e-07
Z99273-5|CAI91166.1| 224|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z98866-7|CAB11549.1| 454|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 37 0.017
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 37 0.017
Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical pr... 35 0.068
AL117202-8|CAB57891.1| 547|Caenorhabditis elegans Hypothetical ... 33 0.16
Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical p... 30 1.5
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 30 1.9
Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical pr... 29 2.5
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 28 5.9
>AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical
protein Y42G9A.6b protein.
Length = 547
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFG 545
Y + +Y+IS + +LP IVS +F++I+Y MSG I F ++ + + +A S G
Sbjct: 362 YRVSAYFISKNLAELPSYIVSAVIFTSILYWMSGLVPIIDSFLIYMLVGILVQNIAISIG 421
Query: 544 LMIGAVFNVVN 512
M +F VN
Sbjct: 422 YMFSCIFGTVN 432
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 497 PTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFVGAIYGLERPKLDCNEAPIC 318
P VPMM F GF + L Y Y+SY YG E A + C+ +
Sbjct: 439 PIFVVPMMAFGGFFINQDTLQWYFVPMKYLSYFGYGYEAVAIAQWTHVEEIPGCSSSLAH 498
Query: 317 LYKYPRQFLSEVAMSPDRFW 258
+ L+ ++ P FW
Sbjct: 499 CSRNGTDVLNSMSFKPSNFW 518
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFG 545
Y + +Y+IS + +LP IVS +F++I+Y MSG I F ++ + + +A S G
Sbjct: 499 YRVSAYFISKNLAELPSYIVSAVIFTSILYWMSGLVPIIDSFLIYMLVGILVQNIAISIG 558
Query: 544 LMIGAVFNVVN 512
M +F VN
Sbjct: 559 YMFSCIFGTVN 569
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 497 PTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFVGAIYGLERPKLDCNEAPIC 318
P VPMM F GF + L Y Y+SY YG E A + C+ +
Sbjct: 576 PIFVVPMMAFGGFFINQDTLQWYFVPMKYLSYFGYGYEAVAIAQWTHVEEIPGCSSSLAH 635
Query: 317 LYKYPRQFLSEVAMSPDRFW 258
+ L+ ++ P FW
Sbjct: 636 CSRNGTDVLNSMSFKPSNFW 655
>Z99273-5|CAI91166.1| 224|Caenorhabditis elegans Hypothetical
protein Y45F10C.6 protein.
Length = 224
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = -3
Query: 503 LGPTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFVGAIYGLERPKLDCNEAP 324
+ P +SVP+M+F GF +T+ +P Y +YVS+ Y E + A + C++
Sbjct: 120 VAPLISVPVMVFGGFLITVDAVPVYYLSLTYVSWYHYAFEAIMIAFFKDHGDIKGCDKPV 179
Query: 323 ICLYKYPR--QFLSEVAMSPDRFWWTF 249
I ++ +F+S+ + FW F
Sbjct: 180 ITQFECSNGLKFISDQDFKVEHFWLDF 206
>Z98866-7|CAB11549.1| 454|Caenorhabditis elegans Hypothetical
protein Y49E10.9 protein.
Length = 454
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = -3
Query: 503 LGPTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFVGAIYGLERPKLDCNEAP 324
+ P +SVP+M+F GF +T+ +P Y +YVS+ Y E + A + C++
Sbjct: 342 VAPLISVPVMVFGGFLITVDAVPVYYLPLTYVSWYHYAFEAIMIAFFKDHGDIKGCDKPV 401
Query: 323 ICLYKYPR--QFLSEVAMSPDRFWWTF 249
I ++ +F+S+ + FW F
Sbjct: 402 ITQFECSNGLKFISDQDFKVEHFWLDF 428
>U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical
protein C05D10.3 protein.
Length = 598
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 497 PTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLE 384
P VP+M F GF +T +P Y W S +SY +YG E
Sbjct: 484 PIFVVPIMAFGGFFITFDAIPSYFKWLSSLSYFKYGYE 521
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVL---VAQ 554
Y +Y+++ I +LP I+ +++ IVY MSG F + SL T+L VA
Sbjct: 407 YRTSAYFLAKNIAELPQYIILPILYNTIVYWMSG---LYPNFWNYCFASLVTILITNVAI 463
Query: 553 SFGLMIGAVF 524
S + +F
Sbjct: 464 SISYAVATIF 473
>Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical
protein F19B6.4 protein.
Length = 695
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 497 PTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLE 384
P + VP+M+F GF +T +P Y ++VS+ +YG E
Sbjct: 579 PIVCVPLMVFGGFMITYEAIPWYFLPFAWVSWYKYGFE 616
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAI----SLYTVLVA 557
YS +YY++ T D +V +FS I+ M+ P ++ + I SL V
Sbjct: 502 YSPSAYYLAKTTADSIQYLVFPVIFSGILLGMTSLPYSVVIITNYLIINILLSLNACSVG 561
Query: 556 QSFGLMIG 533
QSF M G
Sbjct: 562 QSFAAMCG 569
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 497 PTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLE 384
P +PM++F GF V +P Y + S+VS+ ++G E
Sbjct: 452 PMFVLPMLVFGGFYVNANSIPVYYQYVSFVSWFKHGFE 489
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/67 (22%), Positives = 36/67 (53%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFG 545
YS+ +Y+++ ++ +LP + ++ I+Y M+G +++ F +F + + VA S
Sbjct: 375 YSVEAYFLAKSLAELPQYTILPMIYGTIIYWMAGLVASVTSFLVFVFVCITLTWVAVSIA 434
Query: 544 LMIGAVF 524
+ +F
Sbjct: 435 YVGACIF 441
>Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical
protein C10C6.5 protein.
Length = 610
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 509 SFLGPTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGF 378
S GP L++ + + G + LP Y+ W Y+S+ RYG E F
Sbjct: 503 STAGPMLTL-LSLTGGLYANVGALPSYISWIQYLSWFRYGFEAF 545
>AL117202-8|CAB57891.1| 547|Caenorhabditis elegans Hypothetical
protein Y47D3A.11 protein.
Length = 547
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 500 GPTLSVPMMMFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFV 375
GP L+V + G + ++P ++ W Y+S+ RYG E V
Sbjct: 436 GPLLTV-FSLTGGLFTNIAEMPAWINWVQYLSWFRYGYESLV 476
>Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical
protein C16C10.12 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 473 MFAGFGVTLRDLPPYLYWGSYVSYLRYGLEGFVGAIYG-LERPKLD 339
+ +G + P Y+ W + S+ RYG EG V + ++ PK D
Sbjct: 517 LLSGLYGNTNNFPVYIRWMQWTSWCRYGFEGLVVNQWSQVDNPKWD 562
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -1
Query: 712 SYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFGLMIG 533
SYYIS + LP+ + A+ I Y M G + IS+ A S GL +
Sbjct: 436 SYYISRFLSYLPLFTIDGALMIVISYWMIGLNSTWQQVAKSILISVLVEQSATSCGLFLA 495
Query: 532 AVFNVVN 512
+F +
Sbjct: 496 CLFETTS 502
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 344 VSVFPTRIWRPRILPIRTASTRRMTPSTSTAGGRVESLRSPRTSSSVPTK*G 499
+S +P RP P R++S + P R+ S R PRTSSS+P G
Sbjct: 72 ISTWPASCRRPE--P-RSSSQPKENPPKEKISTRLASCRRPRTSSSLPLSLG 120
>Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical
protein T27F2.4 protein.
Length = 165
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 341 PVSVFPTRIWRPRI-LPIRTASTRRMTPSTSTAGGRVESLRSPRTSSSVPTK*GQGRTVN 517
PV++ P + + I LP+ + +++T+ R S S S+ P K +GR
Sbjct: 29 PVAINPAMLAQFSINLPVLPFESSASLGTSTTSSSRCSSTES----SAAPGKIRRGRPQQ 84
Query: 518 NIEDGSDHEAETLRH 562
I DG D ++ RH
Sbjct: 85 EIADGQDAHSQKKRH 99
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -1
Query: 724 YSLGSYYISITIVDLPITIVSCAVFSAIVYTMSGQPMAISRFGMFFAISLYTVLVAQSFG 545
Y+L +YY + I +P+ + IVY + G ++ + + I++ A +FG
Sbjct: 429 YNLWTYYFARCISLIPLFSTDGLILLFIVYWLIGLNTSVMQVIVASIITVLASQAASAFG 488
Query: 544 LMIGAVF 524
+ + +F
Sbjct: 489 IAMSCIF 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,266
Number of Sequences: 27780
Number of extensions: 324068
Number of successful extensions: 1075
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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