Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0680.Seq
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   5.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 343 SFGLSNPYMAPTNPSNPYRKYETYDPQYK 429
           S  LS+P   P  P   + K + + P+YK
Sbjct: 132 SVSLSSPPREPGTPRINFTKLKRHHPRYK 160


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 297  VPL*SSYVSGQILVDVLALTIFVFVLRIAAFFLLKWKLNAVR 172
            +PL ++ +SG +++ V+ +  FVF   + A+   K+ L  +R
Sbjct: 995  LPLVAATLSGVLVLLVIIVLAFVFRESVGAWAYSKYGLRFLR 1036


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 279 SYFREELSWVFIKAYRCFIAVQFRSFQP 362
           S++ E+ SW   KA    + + +  F P
Sbjct: 320 SFWLEQYSWALFKAMSHMLCIGYGRFPP 347


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 279 SYFREELSWVFIKAYRCFIAVQFRSFQP 362
           S++ E+ SW   KA    + + +  F P
Sbjct: 288 SFWLEQYSWALFKAMSHMLCIGYGRFPP 315


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 217 DCSFLPSKMEVKRCSI 170
           D SFLP K    RC++
Sbjct: 72  DISFLPEKSTSSRCAV 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,657
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)