Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0575.Seq
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 9.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -3
Query: 112 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 2
SWI RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 97 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 2
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 97 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 2
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 97 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 2
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3
Query: 97 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 2
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3
Query: 94 RTSAKAFAKGVFINQERKLEVRRRLDTALVL 2
RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 94 RTSAKAFAKGVFINQERKLEVRRRLDT 14
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 659 DVVAVSQAPSPESNPDSPLPVTTM 730
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = -3
Query: 97 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 2
R+T+ ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 119 VKFLDRRKTNISESICQRCFHQSRTKV 39
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2
Query: 668 AVSQAPSPESNPDSPLPVTTM 730
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -3
Query: 97 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 2
R+T+ ++ + VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 119 VKFLDRRKTNISESICQRCFHQSRTKV 39
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 119 VKFLDRRKTNISESICQRCFHQSRTKV 39
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 97 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 2
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 119 VKFLDRRKTNISESICQRCFHQSRTKV 39
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 97 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 2
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 97 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 2
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 116 KFLDRRKTNISESICQRCFHQSRTKV 39
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 669 PFLRLPLRNRTLIPRYP 719
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 519 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 644
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 181 KTNKIEPRSYSIIPCTKYSSSIFSPFEHSNXFKVKLSAHL 300
K + ++ Y+ + +S F FEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 470 SIRYWSWNYRGCWTRLALQLFLVKIFKVYS 559
S+R W + +R C + LA QLF V + + S
Sbjct: 1135 SLRLWGYKWRKCDSTLAKQLFSVLVQAILS 1164
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 650 PSLDVVAVSQAPSPESNPDSPLP 718
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,596,371
Number of Sequences: 59808
Number of extensions: 469975
Number of successful extensions: 1193
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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