Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0574.Seq
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    31   0.14 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.3  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   7.0  

>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = -3

Query: 244  DATNYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRL-SSVTYFSAAH 68
            D     RLV  S  +   E+ NF    ++ I ++ ++NN    +D   +   V Y   A+
Sbjct: 817  DIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELAN 876

Query: 67   NQLEFVQ---LESCEWLQYLNLSHN 2
             QL+ V      S   L+ L+LSHN
Sbjct: 877  VQLKEVPKYIATSMPNLRVLDLSHN 901



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -3

Query: 229 DRLVKLSLNSNALESINFPQGRNVSITHISMNNNALRNI-DIDRLSSVTYFSAAHNQLEF 53
           D L+KLS  +N ++ ++F       +  + + NN +  I +I  L ++      +N+L  
Sbjct: 712 DGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTN 771

Query: 52  VQL-ESCEWLQYLNLSHN 2
           ++  +    L+ L +S+N
Sbjct: 772 LKASQPMIHLRILRISNN 789


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 309 TQPPGLQNFTSINLDNNQSHILMQ 238
           TQPP ++N     LDNN   IL Q
Sbjct: 360 TQPPSMRNDWKDYLDNNSKEILDQ 383


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 208 LNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSV 89
           +N+++  S+NF +   ++   I  NNN L ++ +  +SSV
Sbjct: 56  MNTSSATSLNFNRIETITGDLIIRNNNYLASVALTSISSV 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,512
Number of Sequences: 5004
Number of extensions: 58821
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)