Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0574.Seq
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1110 + 24371934-24374763,24375034-24375518 42 7e-04
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 35 0.063
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 32 0.45
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 32 0.59
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718... 32 0.59
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 32 0.59
09_04_0164 + 15265878-15268701,15268782-15269200 31 0.78
11_01_0798 + 7026509-7029272,7031573-7031994 31 1.0
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 30 2.4
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 29 3.2
07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318... 29 4.2
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 29 5.5
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 5.5
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 29 5.5
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502... 29 5.5
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 28 7.3
08_02_1435 + 27079184-27082006 28 9.6
03_02_0246 - 6772369-6772808,6773223-6775788 28 9.6
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 9.6
>08_02_1110 + 24371934-24374763,24375034-24375518
Length = 1104
Score = 41.5 bits (93), Expect = 7e-04
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = -3
Query: 223 LVKLSLNSNALESINFPQGRN-VSITHISMNNNALRN---IDIDRLSSVTYFSAAHNQLE 56
L +L L++N L + P+ N S+T I ++NN L +D RL ++T F A N+L
Sbjct: 346 LQQLQLSTNKLTGVIPPELSNCTSLTDIEVDNNQLTGAIGVDFPRLRNLTLFYAWQNRLT 405
Query: 55 F---VQLESCEWLQYLNLSHN 2
L CE LQ L+LS+N
Sbjct: 406 GGIPASLAQCEGLQSLDLSYN 426
>01_01_0420 +
3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 35.1 bits (77), Expect = 0.063
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Frame = -3
Query: 247 FDATNYDRLVKLS-----LNSNALE-SINFPQGRNVSITHISMNNNALRNIDIDRLSSVT 86
F + YD L+ L L++N LE SI P+G + S+ + + +++ + L VT
Sbjct: 458 FTSVGYDPLLPLQVDLLDLSNNMLEGSIPIPRGSSTSLKYSNNGFSSMPSNFSAHLRDVT 517
Query: 85 YFSAAHNQLE-FVQLESC--EWLQYLNLSHN 2
+F A N++ + LE C + LQ L+LS+N
Sbjct: 518 FFMADGNEISGNIPLEFCSAKSLQLLDLSYN 548
>09_02_0434 +
9365038-9366150,9367352-9368680,9368906-9370012,
9370960-9371022
Length = 1203
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 109 IDRLSSVTYFSAAHNQLEFVQLESCEW--LQYLNLSHN 2
I R +VTY + N+LE + E C L+YLNLS+N
Sbjct: 825 IQRFIAVTYLDLSWNKLENIPEELCSLTNLEYLNLSYN 862
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -3
Query: 154 ITHISMNNNALRN---IDIDRLSSVTYFSAAHNQLE--FVQLESCEWLQYLNLSHN 2
IT++ + N+L + LSS+T F AA NQL+ LQYL+LS+N
Sbjct: 240 ITNLDLTTNSLSGGIPPSLANLSSLTAFLAAQNQLQGSIPDFSKLSALQYLDLSYN 295
>02_02_0149 -
7182562-7182891,7182989-7183575,7185334-7185433,
7185547-7185563,7185928-7186369,7186501-7186629
Length = 534
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = -3
Query: 166 RNVSITHISMNNNALRNI---DIDRLSSVTYFSAAHNQL--EF-VQLESCEWLQYLNLSH 5
RN +T +S +N + N+ I L ++ Y + N L EF L SC LQ+L+LS+
Sbjct: 234 RNGQVTSLSFHNFQIANLIPASICSLKNLKYLDLSFNNLTGEFPTALYSCSALQFLDLSN 293
Query: 4 N 2
N
Sbjct: 294 N 294
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 31.9 bits (69), Expect = 0.59
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 199 NALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQLESCEWL-- 26
N S+N R+VS +I+ RN+ SV Y + A NQ E S WL
Sbjct: 109 NFFASLNHDDRRDVSFNNIA--GEIPRNLP----PSVEYLNFAANQFEGSIPPSLPWLHT 162
Query: 25 -QYLNLSHN 2
+YLNLSHN
Sbjct: 163 LKYLNLSHN 171
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 31.5 bits (68), Expect = 0.78
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = -3
Query: 214 LSLNSNALESINFPQ-GRNVSITHISMNNNALRNI---DIDRLSSVTYFSAAHNQL--EF 53
+ L+ N L FP+ G + + +++N+L + +D L S+ + N L E
Sbjct: 567 IDLSWNNLTGAIFPELGACAELQVLDLSHNSLTGVLPSSLDGLESIERLDVSDNSLTGEI 626
Query: 52 VQ-LESCEWLQYLNLSHN 2
Q L C L YLNLS+N
Sbjct: 627 PQTLTKCTTLTYLNLSYN 644
>11_01_0798 + 7026509-7029272,7031573-7031994
Length = 1061
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -3
Query: 226 RLVKLSLNSNALE-SINFPQGRNVSITHISMNNNALRNIDIDRLSSV---TYFSAAHNQL 59
RLVKL L+ NAL +I GR +T++ ++ N L + ++ V Y + + NQL
Sbjct: 522 RLVKLDLSGNALSGTIPAAIGRCGELTYLDLSKNNLSGAIPEAIAGVRVLNYLNLSRNQL 581
Query: 58 E 56
E
Sbjct: 582 E 582
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 29.9 bits (64), Expect = 2.4
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Frame = -3
Query: 238 TNYDRLVKLSLNSNALESINFPQGR-NVS--ITHISMNNNALRNI---DIDRLSSVTYFS 77
TN RL +S+ +N L+ + P N+S + + + N + + DI+ LSS+TYF
Sbjct: 339 TNCTRLQMISIANNRLQG-HLPSSLGNLSSQLGMLHLGGNQISGVLPSDIENLSSLTYFR 397
Query: 76 AAHNQLEFV---QLESCEWLQYLNLSHN 2
N++ V L S + LQ L L +N
Sbjct: 398 IDTNEITGVLPEWLGSLKHLQVLGLFNN 425
>03_03_0274 -
16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = -3
Query: 160 VSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLE---FVQLESCEWLQYLNLSHN 2
+ +++ +++ A +N+ RLS +T+ + N + L++C LQYLNLS+N
Sbjct: 75 LDLSNSNISGPAFQNLS--RLSGLTHLDLSANSITGELHDDLKNCLHLQYLNLSYN 128
>07_01_0418 -
3186093-3186437,3187286-3187438,3187541-3188398,
3188479-3188541
Length = 472
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 214 LSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAH--NQLEFVQLE 41
L+L LE N N+ I + N NAL + I +T S +H NQL+ + +E
Sbjct: 178 LNLKRLKLEHTNITD-ENMQI--LISNCNALEFLGIVDCGKLTRLSTSHLWNQLKHLHVE 234
Query: 40 SCEWLQYLNLS 8
SC L+ + L+
Sbjct: 235 SCHLLKEIELN 245
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 226 RLVKLSLNSNALESINFPQGRNVSITH-ISMNNNALRNIDIDRLSSVTYFSAAHNQLEFV 50
+ +L+L S L I + S+ H +S+ +NAL+ + + + S++ S N L V
Sbjct: 401 KFAELTLRSPVLSYIKVSR---CSVLHRVSITSNALQKLVLQKQESLSSLSLLCNNLIDV 457
Query: 49 QLESCEWL 26
L CE L
Sbjct: 458 DLSDCESL 465
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -3
Query: 235 NYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVT 86
N+ +V ++L++N + P+ V++ H+S+N+N L D S+T
Sbjct: 29 NFTSIVTINLSNNKIGG-TIPEDLPVTLQHMSLNDNQLNGQLPDAFGSLT 77
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = -3
Query: 223 LVKLSLNSNALES-INFPQGRNVSITHISMNNNALRNI---DIDRLSSVTYFSAAHNQLE 56
LV L L+ N+L I GR ++++ ++NN L I L+++ + ++N L
Sbjct: 112 LVFLDLSINSLYGPIPSDIGRLAELSYLDLSNNKLTGSIPPSIGNLTNLGFLELSNNYLS 171
Query: 55 FVQL----ESCEWLQYLNLSHN 2
L ++ LQYL+LSHN
Sbjct: 172 QGILSCLPDTLHNLQYLDLSHN 193
>02_01_0674 +
5020118-5020202,5020301-5020436,5021075-5021140,
5021219-5021290,5021362-5021433,5024242-5024301,
5024494-5024565,5024655-5024720,5024798-5024863,
5024945-5025273,5025713-5025969,5026213-5026484,
5026580-5026715,5026833-5026972,5027051-5027207,
5027476-5027634
Length = 714
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -3
Query: 154 ITHISMNNNALR-NIDIDRLSSVTYFSAAHNQLEF---VQLESCEWLQYLNLSHN 2
+T I ++NN L +I ++TY + A N L + + L+YLN+SHN
Sbjct: 71 VTEIDLSNNNLHGSIPYQLPPNLTYLNLATNNLSGNLPYSISNMVSLEYLNVSHN 125
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 28.3 bits (60), Expect = 7.3
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = -3
Query: 223 LVKLSL-NSNALESINFPQGRNVSITHISMNNNALRNIDIDRLS---SVTYFSAAHNQL- 59
LV L L N+N + +I R I H+ + N L +D + S ++T+ S N L
Sbjct: 150 LVDLRLYNNNLVGAIPHQLSRLPKIAHVDLGANYLTGLDFRKFSPMPTMTFLSLFLNSLN 209
Query: 58 ----EFVQLESCEWLQYLNLSHN 2
EFV + S L +L+LSHN
Sbjct: 210 GSFPEFV-IRSGN-LTFLDLSHN 230
>08_02_1435 + 27079184-27082006
Length = 940
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 166 RNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLE--FVQLESCEWLQYLNLSHN 2
R+ + +++ +N L D +SV +HN L Q + LQYL+LSHN
Sbjct: 490 RSKMLITLNIRHNQLEGYIPDMPNSVRVLDLSHNNLSGSLPQSFGDKELQYLSLSHN 546
>03_02_0246 - 6772369-6772808,6773223-6775788
Length = 1001
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -1
Query: 381 WTAVRNIIDDTNEVTIDLSGLNLTTQPP-----GLQNFTSINLDNN 259
W + D + +++DLSGLNL+ P L + S+NL NN
Sbjct: 69 WPRLSCDADGSRVLSLDLSGLNLSGPIPAAALSSLSHLQSLNLSNN 114
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 384 YWTAVRNIIDD-TNEVTIDLSGLNLTTQPPGL----QNFTSINLDNN 259
Y T+V I D T+ + +DLS N+TT PP L N + LD N
Sbjct: 531 YLTSVPEGIKDLTSLIELDLSDNNITTLPPELGLLEPNLQVLKLDGN 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,639
Number of Sequences: 37544
Number of extensions: 333942
Number of successful extensions: 816
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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