Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0574.Seq
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)              29   3.2  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              28   7.4  
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)                       28   7.4  
SB_31862| Best HMM Match : E7 (HMM E-Value=4.4)                        28   7.4  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 399 VDHC*CR*LIHAKDVLMILVDQCHWLAVNCYCLSL 503
           ++H  CR ++H+ D  ++++  CH+  + C+ L L
Sbjct: 510 INHPRCRIVVHSPDTDVLVLGVCHYTRIGCHELWL 544


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 399 VDHC*CR*LIHAKDVLMILVDQCHWLAVNC 488
           ++H  CR ++H+ D  ++++  CH+  + C
Sbjct: 820 INHPRCRIVVHSPDTDVLVLGVCHYTRIGC 849


>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
          Length = 1080

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 399  VDHC*CR*LIHAKDVLMILVDQCHWLAVNC 488
            ++H  CR ++H+ D  ++++  CH+  + C
Sbjct: 987  INHPRCRIVVHSPDTDVLVLGVCHYTRIGC 1016


>SB_31862| Best HMM Match : E7 (HMM E-Value=4.4)
          Length = 584

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 399 VDHC*CR*LIHAKDVLMILVDQCHWLAVNC 488
           ++H  CR ++H+ D  ++++  CH+  + C
Sbjct: 344 INHPRCRIVVHSPDTDVLVLGVCHYTRIGC 373


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 447 MILVDQCHWLAVNCYCLSLNIQFCSVFGV*MCNMVVV 557
           ++ V  C  L+V CYC  L++++C +  V  C  V V
Sbjct: 421 LLSVRYCPLLSV-CYCPLLSVRYCPLLSVRYCLFVTV 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,446,028
Number of Sequences: 59808
Number of extensions: 428023
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)