Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0574.Seq
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    33   0.30 
AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    33   0.30 
U56961-5|AAK39298.2|  156|Caenorhabditis elegans Hypothetical pr...    32   0.53 
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    32   0.53 
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    32   0.53 
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    31   1.2  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -3

Query: 217 KLSLNSNALESIN-FPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQ-- 47
           KL L  N+   +       NVS+  +S N+ +    DI  LSS+T   A +N LE +   
Sbjct: 65  KLDLTHNSFVILRGLTTFNNVSVLDVSFNSLSALPEDIGTLSSLTTLIARNNLLEHLPKG 124

Query: 46  LESCEWLQYLNLSHN 2
           L+  E L++L LS N
Sbjct: 125 LQLLENLEHLYLSGN 139


>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -3

Query: 217 KLSLNSNALESIN-FPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQ-- 47
           KL L  N+   +       NVS+  +S N+ +    DI  LSS+T   A +N LE +   
Sbjct: 65  KLDLTHNSFVILRGLTTFNNVSVLDVSFNSLSALPEDIGTLSSLTTLIARNNLLEHLPKG 124

Query: 46  LESCEWLQYLNLSHN 2
           L+  E L++L LS N
Sbjct: 125 LQLLENLEHLYLSGN 139


>U56961-5|AAK39298.2|  156|Caenorhabditis elegans Hypothetical
           protein T19D7.6 protein.
          Length = 156

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -3

Query: 235 NYDRLVKLSLNSNALESINFPQGRNVSITHISMNNNALRNIDI 107
           N  R+ KL+L++N L   +F   +  ++  +S+ NN +RN+ +
Sbjct: 44  NRTRIEKLTLDNNVLTENSFNMPKFANLKELSVRNNKIRNLGV 86


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
 Frame = -3

Query: 250 HFDATNYDRLVKLSLNSNALESIN-FPQGRNVSITHISMNNNALRNIDI---DRLSSVTY 83
           HF  ++++ LV L L  N + ++N F   R   +  + +  N +R +     ++L S+  
Sbjct: 190 HF--SSFNTLVTLKLARNHITTLNQFSFSRLRKLESLDLTRNMIREVRFLAFNQLPSLQN 247

Query: 82  FSAAHN---QLEFVQLESCEWLQYLNLSHN 2
            S A N   +L+     +CE L++LNLS N
Sbjct: 248 VSLARNDVYRLDDGMFYACEGLKHLNLSTN 277


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
 Frame = -3

Query: 250 HFDATNYDRLVKLSLNSNALESIN-FPQGRNVSITHISMNNNALRNIDI---DRLSSVTY 83
           HF  ++++ LV L L  N + ++N F   R   +  + +  N +R +     ++L S+  
Sbjct: 190 HF--SSFNTLVTLKLARNHITTLNQFSFSRLRKLESLDLTRNMIREVRFLAFNQLPSLQN 247

Query: 82  FSAAHN---QLEFVQLESCEWLQYLNLSHN 2
            S A N   +L+     +CE L++LNLS N
Sbjct: 248 VSLARNDVYRLDDGMFYACEGLKHLNLSTN 277


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
            protein T05H4.3 protein.
          Length = 1152

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/75 (24%), Positives = 40/75 (53%)
 Frame = -3

Query: 226  RLVKLSLNSNALESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQ 47
            +L  ++L+ NAL   +       ++  + ++NN+++ I    L ++T  +  +N+L  + 
Sbjct: 931  KLKNINLSQNALSRFDCSLFDLPNLESVDLSNNSIKTIIRRPLKTLTSLNLQNNKLTTLT 990

Query: 46   LESCEWLQYLNLSHN 2
              SC  L  L++S+N
Sbjct: 991  PLSCPNLVSLDISNN 1005


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +2

Query: 653 RAVGFIVIAFKIIFPVTKTNHLIIDLRFSFKAETGISLSPSSR 781
           + +GF++ +F +I P     ++  D +F++   + ++ SPSS+
Sbjct: 145 KTIGFVLTSFAVIVPGLTCLYMYYDDKFNYPQMSAMATSPSSK 187


>Z68219-3|CAA92480.2|  747|Caenorhabditis elegans Hypothetical
           protein T05A1.3 protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = -3

Query: 256 ITHFDATNYDRLVKLSLNSNALESINFPQGRNVSITH---ISMNNNALRNIDIDRL-SSV 89
           I  +   +   L+ L ++ N    I F     +S+T    I+MNNN + NID  R   ++
Sbjct: 156 IEPYSLRSLQNLIHLDVSDN---DIGFLTNTLISLTKLKVITMNNNKITNIDFRRFPENL 212

Query: 88  TYFSAAHNQLEFVQL--ESCEWLQYLNLSHN 2
           T  S  HN +  +     S   L+ L+L+ N
Sbjct: 213 TDLSIRHNLVSTIHYVPASARNLKRLDLAGN 243


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -3

Query: 157 SITHISMNNNALRNIDIDRLSSVT----YFSAAHNQLEFVQ---LESCEWLQYLNLSHN 2
           ++TH+++N N L  ID D L   T        A+N LE +    L   + L++L++S N
Sbjct: 241 NLTHLNLNGNKLNRIDGDVLKGCTDTLVELFIANNYLEHIPHGVLSGMKQLEHLDISKN 299


>Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical
           protein C02C6.3a protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 247 FDATNYDRLVKLSLNSNALESINFPQGR---NVSITHISMNNNALRNIDIDRLSSVTYFS 77
           F A +   L+KL+L++N + ++N    R   N+ +  IS N    R  D+D L    + +
Sbjct: 116 FGADSQTSLIKLNLSANYIVNLNSNALRNMPNLQVLDISNNEIVFRPRDVDFLKHTPHLT 175

Query: 76  AAHNQLEF 53
             + +  F
Sbjct: 176 QLYMRRAF 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,447
Number of Sequences: 27780
Number of extensions: 328362
Number of successful extensions: 667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)