Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0574.Seq
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 591 TQSSQDENNHFKRQPYCTFKRQKHYK 514
           T   Q  ++H+ R+  C+  R + YK
Sbjct: 221 THGFQHTSSHYSRERSCSRDRNREYK 246


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 202 SNALESINFPQGRNVSITHISMNN 131
           S   +S   P G+ VSIT+++  N
Sbjct: 71  SQGSDSYTAPDGQQVSITYVADEN 94


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 635 SEILAARAVGFIVIAFKIIFPVTKTNH 715
           + ILAA A    V+ F    P  + NH
Sbjct: 280 NNILAASACSLFVVIFHFAHPREEFNH 306


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 321 LNLTTQPPGLQNFTSINLDNNQSHI 247
           L+ +  P GL     IN +N  +HI
Sbjct: 267 LDASNAPEGLLGLKLINAENETAHI 291


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 181 LLTQEHYYSDLALRVYRS 234
           LLT   + S LA RV++S
Sbjct: 301 LLTSRDFLSSLAFRVFQS 318


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -1

Query: 576  DENNHFKRQPYCTFKRQKHYKTGY 505
            D  N F     C F++ +H+   Y
Sbjct: 1604 DSTNDFVGPKNCLFRKPEHFVASY 1627


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,854
Number of Sequences: 438
Number of extensions: 3925
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)