Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0574.Seq
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    32   0.37 
At1g07390.1 68414.m00788 leucine-rich repeat family protein cont...    31   0.65 
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont...    31   0.86 
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s...    31   1.1  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    28   6.1  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    28   8.0  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    28   8.0  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   8.0  
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote...    28   8.0  

>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 145 ISMNNNALRNI-DIDRLSSVTYFSAAHNQLEFVQ-LESCEWLQYLNLSHN 2
           + +NN +L  I  +++L  V     +HN+L   + LE+ + L  LNLSHN
Sbjct: 521 LRLNNLSLSRIASVEKLLFVQMLDLSHNELHSTEGLEAMQLLSCLNLSHN 570


>At1g07390.1 68414.m00788 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 976

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = -3

Query: 172 QGRNVSITHISMNN-NALRNIDIDRLSSVTYFSAAHNQLE--FVQLESCEWLQYLNLSHN 2
           + +N+++  IS N  + +  + I R+S ++Y   + NQL+  F  L    W++ +++SHN
Sbjct: 573 KSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHN 632


>At3g15410.1 68416.m01955 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596;
           identical to leucine-rich repeat protein [Arabidopsis
           thaliana] gi|2760084|emb|CAA76000
          Length = 584

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = -3

Query: 244 DATNYDRLVKLSLNSNALESINFPQG-RNV-SITHISMNNNALRNI 113
           D  N   L+ L LN N+L+SI  P+G +N+ S+ H+ ++NN + ++
Sbjct: 494 DILNLSNLIILDLNQNSLQSI--PKGIKNMTSLKHLDISNNNISSL 537



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = -1

Query: 399 LAQMQYWTAVRNIIDDTNEVTIDLSGLNLTTQPPGLQNFTSI-NLDNNQSHILMQP 235
           L+++Q      +I++ +N + +DL+  +L + P G++N TS+ +LD + ++I   P
Sbjct: 483 LSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLP 538


>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
           similarity to F-box protein FBL2 GI:6063090 from [Homo
           sapiens]
          Length = 942

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -3

Query: 232 YDRLVKLSLNSNALESI---NFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQ 62
           ++R   L+L S  L SI   N P  R ++IT     +NALR + + +  ++T      + 
Sbjct: 504 FNRFTDLNLQSIMLSSITVSNCPALRRITIT-----SNALRRLALQKQENLTTLVLQCHS 558

Query: 61  LEFVQLESCEWL 26
           L+ V L  CE L
Sbjct: 559 LQEVDLSDCESL 570


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -3

Query: 154 ITHISMNNNALRNIDIDRLSSVTYFSAAH---NQLEFVQLESCEWLQYLNLSHN 2
           I  +S+  N L+ +D+   +S+   S+     NQLE +Q+E CE L+ L +  N
Sbjct: 644 IPDLSLATN-LKKLDVSNCTSLVELSSTIQNLNQLEELQMERCENLENLPIGIN 696


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -2

Query: 629 LSAHHNMIT--DLILHNHPRMKTITLNDNHIAHLNAKNTTKLDI*T*AITIYCQPMTLIN 456
           + AH N+++   + +    R + I +   HI +L+  + T+ ++   +I ++C+   L  
Sbjct: 689 IPAHMNLVSLERVTMTGCSRFRKIPVISTHINYLDIAHNTEFEVVHASIALWCRLHYLNM 748

Query: 455 *YHQNIFGM 429
            Y++N  G+
Sbjct: 749 SYNENFMGL 757


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 115 IDIDRLSSVTYFSAAHNQLEFVQLESCEWLQYLNL 11
           + ++ L ++  F A H  ++ + +E C  L Y NL
Sbjct: 675 LSLETLKTLFEFGALHKHIQHLHVEECNELLYFNL 709


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
 Frame = -1

Query: 405 DPLAQMQYWT-------AVRNII--DDTNEVTIDLSGLNLTTQPPG----LQNFTSINLD 265
           DPL+ +Q W        + R ++  +D+  VT+ L   NL    P     LQN  S+NL 
Sbjct: 48  DPLSLLQSWNYDHDNPCSWRGVLCNNDSRVVTLSLPNSNLVGSIPSDLGFLQNLQSLNLS 107

Query: 264 NN 259
           NN
Sbjct: 108 NN 109


>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           1 GB:AAC49810 (putative receptor protein kinase);
           contains Pfam profiles: PF00560 Leucine Rich Repeat (17
           repeats), PF00069 Eukaryotic protein kinase domain
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 160 VSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFV---QLESCEWLQYLNLSHN 2
           +++T  +++    +N     L+ +TY   + N +E      L  C  L++LNLSHN
Sbjct: 92  INLTDSTISGPLFKNFSA--LTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,733
Number of Sequences: 28952
Number of extensions: 291843
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)