Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0573.Seq
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.69 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   3.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   6.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   6.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   6.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.5  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   VKRKAEVAETLANLERQI 55
           +KRK+E+AE L   ERQI
Sbjct: 184 IKRKSELAENLGLSERQI 201


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 552 SRPGTPKEKESNVNIINK 605
           +RP TPKE E  V II+K
Sbjct: 186 TRPITPKEIERMVQIIHK 203


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   VKRKAEVAETLANLERQI 55
           ++RKAE+A +L   ERQ+
Sbjct: 183 IRRKAELANSLGLSERQV 200


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 238 WTCRCCEAKNERNSETESQTNEDSSDTQISSN 333
           +TCRC + KNE + E +     D +  +I+S+
Sbjct: 175 FTCRCKDYKNE-DLEDQPVVYNDVNGVRINSS 205


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQI 55
           +R+ E+AE+L   ERQI
Sbjct: 211 RRRIEIAESLRLTERQI 227


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQI 55
           +R+ E+AE+L   ERQI
Sbjct: 211 RRRIEIAESLRLTERQI 227


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQI 55
           +R+ E+AE+L   ERQI
Sbjct: 211 RRRIEIAESLRLTERQI 227


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQI 55
           +R+ E+A TL   ERQI
Sbjct: 261 RRRIEIAHTLVLSERQI 277


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQI 55
           +R+ E+A TL   ERQI
Sbjct: 261 RRRIEIAHTLVLSERQI 277


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQI 55
           +R+ E+A TL   ERQI
Sbjct: 261 RRRIEIAHTLVLSERQI 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,812
Number of Sequences: 336
Number of extensions: 2694
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)