Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0573.Seq
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc...    54   2e-08
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   4.1  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   5.4  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   5.4  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    26   7.1  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 138

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +2

Query: 11  KAEVAET-LANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKFKE 187
           K ++ ET L  LE  IY  EGSYLE T   GNIIRG++  L  N S      +R   + E
Sbjct: 31  KRQLLETSLIGLEDSIYRLEGSYLEKTSGTGNIIRGFEGLLKNNASNL----RRRADYSE 86

Query: 188 AERLFSKSSITS 223
           ++RLFS SS++S
Sbjct: 87  SDRLFSLSSLSS 98


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
 Frame = +1

Query: 265 NERNSETESQTNEDSSDTQ-------ISSNLNLGG-LNHTTIHGSTESIASKPSGKQNTN 420
           N  N+ T SQ + DS +         +S   N+ G  NH   HG+T    SK     N  
Sbjct: 365 NHNNTTTSSQVHPDSRNPDPKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKE 424

Query: 421 G 423
           G
Sbjct: 425 G 425


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 241 TCRCCEAKNERNSETESQTNEDSSDTQISSNLNLGGLNHTTIHGST 378
           TC  C A  + NS+  + T+ DS++    SN      + T   G+T
Sbjct: 432 TCAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTNDQGAT 477


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 101  NIIRGWDRYLTT--NKSTNSKADKRNRKFKEAERLFSKSS 214
            ++++ + R LTT  N +    ++K+N    +AERLF K++
Sbjct: 1204 HVVQSFCRLLTTWMNPNLMHDSNKKNSSLTDAERLFVKAT 1243


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 350 RPPRLRFELICVSEESSLVCDSVSLFLSFLASQHLQVH 237
           RP  L   L   S E   VCD      +F    HL++H
Sbjct: 36  RPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH 73


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +2

Query: 341 LEVLTIRQFMVPLKALLLSH 400
           +E+ T+RQF +P+K L+L++
Sbjct: 556 MELATVRQFDIPVKILILNN 575


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 453 NKTNSYTKNSYCIWHAP 503
           N  N Y  NS CI+H P
Sbjct: 368 NVANKYLPNSVCIYHVP 384


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 104 IIRGWDRYLTTNKSTNSKAD 163
           ++  WDRYL  N S N + D
Sbjct: 231 LLEEWDRYLMQNGSENDRPD 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,020
Number of Sequences: 5004
Number of extensions: 45897
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)