Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0573.Seq
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 70 2e-12
01_01_0936 + 7384895-7385047,7385831-7385931,7386499-7386568,738... 70 2e-12
01_05_0427 + 22057201-22057478,22057601-22057793 32 0.45
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 30 1.8
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75... 29 4.2
11_06_0717 - 26575009-26575152,26576461-26577978 29 5.6
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786... 28 7.4
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 7.4
02_02_0500 - 10993675-10994067,10994434-10995738 28 7.4
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/76 (39%), Positives = 59/76 (77%)
Frame = +2
Query: 2 VKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKF 181
+ ++A++ E L ++ERQ+Y E +YL+++ +G++++G++ +L+++K+T++ KR+RKF
Sbjct: 528 MSKRAKLQEELRSIERQVYEMETTYLQESNQFGSVLKGFESFLSSSKNTSNL--KRSRKF 585
Query: 182 KEAERLFSKSSITSMA 229
+ ERLFS SS+TS A
Sbjct: 586 QADERLFSLSSVTSPA 601
>01_01_0936 +
7384895-7385047,7385831-7385931,7386499-7386568,
7386725-7386752,7386791-7386892,7387070-7387164
Length = 182
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/76 (39%), Positives = 59/76 (77%)
Frame = +2
Query: 2 VKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKF 181
+ ++A++ E L ++ERQ+Y E +YL+++ +G++++G++ +L+++K+T++ KR+RKF
Sbjct: 35 MSKRAKLQEELRSIERQVYEMETTYLQESNQFGSVLKGFESFLSSSKNTSNL--KRSRKF 92
Query: 182 KEAERLFSKSSITSMA 229
+ ERLFS SS+TS A
Sbjct: 93 QADERLFSLSSVTSPA 108
>01_05_0427 + 22057201-22057478,22057601-22057793
Length = 156
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +1
Query: 238 WTCRCCEAKNERNSETESQTNEDSSDTQISSNLNLG--GLNHTTIHGSTESIASKP 399
W CRCC A+ + N D Q+ ++ G H +H T ++A +P
Sbjct: 26 WGCRCCRARTTCTAGFIGLNNIDHGGRQVWADTRYGVADAEHERVHAETFALAPQP 81
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 241 TCRCCEAKNERNSETESQTNEDSSDTQISSNLNLGGLNHTTIHGSTESIASKPSGKQNTN 420
TC +AK+ + T +++ SS+L H T ST S + KP+ QN N
Sbjct: 483 TCST-KAKSPEVQSASNHTTNNAASVNTSSSLESNASTHVTNGKSTSSESQKPT--QNAN 539
Query: 421 G 423
G
Sbjct: 540 G 540
>09_01_0041 +
746494-746691,747301-747495,750509-750631,751457-751636,
752772-753058,754343-754907
Length = 515
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 119 DRYLTTNKSTNSKADKRNRKFKEAERLFS------KSSITSMAAVSGLVDAVKLKMKEIV 280
++Y + NK++ + +D EAE L + K +A GL+ V K KE+
Sbjct: 191 EQYASQNKASAAASDNTGNALMEAESLINLKSNDLKEKNEELAQAEGLIVDVHAKEKELE 250
Query: 281 KQNRKLMKTLQT 316
+ N L K LQ+
Sbjct: 251 RLN-NLHKNLQS 261
>11_06_0717 - 26575009-26575152,26576461-26577978
Length = 553
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 658 VVAAASKRTTRKLGTGEHYALYHVNGRFLVGASLKFM 768
+V A K T KLG G+ A+ NG+ + + + M
Sbjct: 15 LVKGAMKMVTNKLGAGDRLAIVPFNGKVVAAGATRLM 51
>06_01_1009 -
7859357-7859405,7860476-7860660,7860747-7860821,
7860852-7861313,7861411-7861482,7861629-7861775,
7861888-7862043,7862136-7862306,7862505-7862675,
7862763-7862828,7864302-7864387,7864505-7864667
Length = 600
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Frame = +2
Query: 149 NSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKEIVKQ------NRKLMKTL 310
+++A R K KEA L ++ ++ A + +VD ++ K +E++KQ K++ L
Sbjct: 169 DNRALDRLTKQKEAALLDAERTVEIAMAKAAMVDDLQNKNQELMKQIEICHEENKILDKL 228
Query: 311 QTHRLVQISILEVLTIRQ 364
Q ++ ++ L LT+++
Sbjct: 229 QRQKVAEVKKLS-LTVKE 245
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 534 SGMGLDSRPGTPKEKESN--VNIINKVDLTPNS 626
S G+D++PGTP +N +N KVD T +S
Sbjct: 233 SSAGIDNQPGTPGTSNNNKKLNYTTKVDSTCDS 265
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 5 KRKAEVAETLANLERQIYAFEGSYLEDTQLYGNI 106
K AE + L +L+ Q F+G LED QL +I
Sbjct: 137 KLSAESGQQLGSLKDQRLVFDGEELEDNQLIADI 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,922
Number of Sequences: 37544
Number of extensions: 263656
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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