Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0573.Seq
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 30   2.5  
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_54318| Best HMM Match : TPR_2 (HMM E-Value=2.2e-23)                 29   3.3  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             28   10.0 
SB_35845| Best HMM Match : ShTK (HMM E-Value=7.9e-14)                  28   10.0 
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   10.0 

>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 247 RCCEAKNERNSETESQTNEDSSDTQISSNL-NLGGLNHTTIHGSTESIASKPSGKQNTNG 423
           +C EA +E  SETE +T  D    ++ +NL  L G++ +++H S +++ S P      NG
Sbjct: 806 KCLEAPSESQSETEYET--DFYSLELENNLEQLEGISVSSMH-SLDNLDSMPEVAWLGNG 862


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/67 (26%), Positives = 36/67 (53%)
 Frame = +2

Query: 161 DKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKEIVKQNRKLMKTLQTHRLVQISI 340
           D+   K ++ E+    + I  MA + G +DAV++  K++V+  R + K +     +Q   
Sbjct: 32  DRERSKMEQQEKKII-NDIKKMAKM-GQMDAVRIMAKDLVRTRRYVKKFILMKANIQAVS 89

Query: 341 LEVLTIR 361
           L++ T+R
Sbjct: 90  LKIQTLR 96


>SB_54318| Best HMM Match : TPR_2 (HMM E-Value=2.2e-23)
          Length = 640

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = +2

Query: 5   KRKAEVAETLANLERQIYAFEGS---YLEDTQLYGNIIRGWDR---YLTTNKSTNSKADK 166
           +R   +A TLA L      F+ +   + E   +       W+R   YL    +     + 
Sbjct: 254 ERYVNIANTLACLYVDTEQFDKADTMHREVLHIKEKFAEKWERGAYYLAVGYNGLGVLNY 313

Query: 167 RNRKFKEAERLFSKSSITSMAAVSGLVDAVKL 262
           R  KFKEAE  ++K+      A SGL +  +L
Sbjct: 314 RQNKFKEAEEFYNKALEKHHEAKSGLKEIAEL 345


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +1

Query: 265 NERNSETESQTNEDSSDTQISSNLNLGGLNHTTIHGSTESIASKPSGKQNTN 420
           N  NS + S +N ++++   ++N N    N+TT + ++ S  +  +   N N
Sbjct: 16  NNNNSSSNSSSNNNNNNNNNNNNNNNNNNNNTTTNNNSNSSNNNNTTTNNNN 67


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 492 WHAPEGFSSESKILSGMGLDSRPGTPKEKESNVNIINKVDLTP 620
           +H P G S  S+ +      S PG P      + I++K   TP
Sbjct: 314 FHQPAGHSPHSRPIRRTHSSSSPGVPPSPPPTMTIVSKPTSTP 356


>SB_35845| Best HMM Match : ShTK (HMM E-Value=7.9e-14)
          Length = 330

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 217 YVYGCC*WTCRCCEAKNERNSETESQTNE 303
           Y  G C WTCR C+ +N  + + +    E
Sbjct: 148 YAVGNCPWTCRFCKKENGDSKKCKDLAGE 176


>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +2

Query: 161 DKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKEIVKQNRKLMKTLQTH----RLV 328
           D    K K+ E+   KS    MAA++ +   V+  + E      +   T          +
Sbjct: 710 DDAPEKGKKGEK--GKSFKEKMAAITNICSTVQNALDEAASMGERFKNTFNWTVPFCSYL 767

Query: 329 QISILEVLTIRQFMVPLKALLLSHLANK 412
             +I  + T+  ++VPLK LLL+   NK
Sbjct: 768 VCAIFTIGTVVLYLVPLKFLLLAFGINK 795


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,358,615
Number of Sequences: 59808
Number of extensions: 317853
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)