Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0573.Seq
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    29   2.9  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80452-3|AAB37861.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 274 NSETESQTNEDSSDTQISSNLNLGGLNHTTIHGSTESIASKPSGKQNTNGT 426
           +  TES T   S+++ +S    + G + +T+ GSTES ++  S    + G+
Sbjct: 651 SGSTESSTIPGSTESTVSEASTVSGSSVSTVSGSTESTSAGASTVSGSTGS 701


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
            protein F25G6.9 protein.
          Length = 1373

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 149  NSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKEIVKQNRKLMKTL 310
            N   D++  K++E E L    SI      +GL+ + K  +KEI + N+K+++ L
Sbjct: 911  NIVIDEKTEKYEETE-LVDDESIEKF--FNGLISSPKKDLKEIEQNNKKVLEKL 961


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 149 NSKADKRNRKFKEAE-RLFSKSSITSMAAVSGLVDAVKLKMKEIVKQNRKLMKT 307
           N KADK  R  +++E R   K+++     ++     + ++ + I+K++RKL K+
Sbjct: 394 NMKADKEARAQEKSETRQLEKTALKEARLMATEAKRIAMEARAIIKESRKLEKS 447


>U80452-3|AAB37861.1|  339|Caenorhabditis elegans Hypothetical
           protein C16C8.17 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 286 ESQTNEDSSDTQISSNLNLGGL-NHTTIHGSTESIASKPSGKQNTNG 423
           ES  N+  S  Q +   N G + ++  IH  T + A+ P G  N NG
Sbjct: 255 ESDLNDGCSKRQATCEANPGTMCSNFQIHAETSAGATVPVGSWNANG 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,502
Number of Sequences: 27780
Number of extensions: 251321
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)