Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0573.Seq
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   4.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   4.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 697 GTGEHYALYHVNGRFLVGASLKFMLGVR 780
           GTGE  A    NG+    A L F LGV+
Sbjct: 46  GTGEFEAGISKNGQTREHALLAFTLGVK 73


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 697 GTGEHYALYHVNGRFLVGASLKFMLGVR 780
           GTGE  A    NG+    A L F LGV+
Sbjct: 62  GTGEFEAGISKNGQTREHALLAFTLGVK 89


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 697 GTGEHYALYHVNGRFLVGASLKFMLGVR 780
           GTGE  A    NG+    A L F LGV+
Sbjct: 119 GTGEFEAGISKNGQTREHALLAFTLGVK 146


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 32  LANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADK 166
           L NL  QI+A  GS         N    +DRY T  +  + K  +
Sbjct: 115 LGNLGCQIFAVIGSLTGIGAAITNAAIAYDRYSTIARPLDGKLSR 159


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/68 (20%), Positives = 25/68 (36%)
 Frame = +2

Query: 56  YAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKFKEAERLFSKSSITSMAAV 235
           YAF    L+   ++GN I     Y     S     D  + +  E   L    S+  +   
Sbjct: 566 YAFIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFIN 625

Query: 236 SGLVDAVK 259
           +  ++ V+
Sbjct: 626 NNYINLVR 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,889
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)