Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0573.Seq
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14385.2 68417.m02217 expressed protein                             66   3e-11
At4g14385.1 68417.m02216 expressed protein                             66   3e-11
At4g14385.3 68417.m02218 expressed protein                             64   8e-11
At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger) fa...    33   0.16 
At5g51270.1 68418.m06356 protein kinase family protein contains ...    31   1.2  
At4g15450.1 68417.m02362 senescence/dehydration-associated prote...    30   1.5  
At2g01750.1 68415.m00104 expressed protein                             28   8.2  
At1g14840.1 68414.m01775 expressed protein                             28   8.2  

>At4g14385.2 68417.m02217 expressed protein
          Length = 156

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/77 (38%), Positives = 56/77 (72%)
 Frame = +2

Query: 2   VKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKF 181
           + ++ ++ + L ++E+Q+Y  E SYL+++   GN ++G++ +L+++KST S   KR+RKF
Sbjct: 19  LNKREKLRQELRSIEKQVYELETSYLQESSHIGNALKGFEGFLSSSKSTASA--KRSRKF 76

Query: 182 KEAERLFSKSSITSMAA 232
           +  +R+FS SS+TS AA
Sbjct: 77  QPEDRVFSLSSVTSPAA 93


>At4g14385.1 68417.m02216 expressed protein
          Length = 163

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/77 (38%), Positives = 56/77 (72%)
 Frame = +2

Query: 2   VKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKF 181
           + ++ ++ + L ++E+Q+Y  E SYL+++   GN ++G++ +L+++KST S   KR+RKF
Sbjct: 19  LNKREKLRQELRSIEKQVYELETSYLQESSHIGNALKGFEGFLSSSKSTASA--KRSRKF 76

Query: 182 KEAERLFSKSSITSMAA 232
           +  +R+FS SS+TS AA
Sbjct: 77  QPEDRVFSLSSVTSPAA 93


>At4g14385.3 68417.m02218 expressed protein
          Length = 129

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 29/76 (38%), Positives = 55/76 (72%)
 Frame = +2

Query: 2   VKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTNSKADKRNRKF 181
           + ++ ++ + L ++E+Q+Y  E SYL+++   GN ++G++ +L+++KST S   KR+RKF
Sbjct: 19  LNKREKLRQELRSIEKQVYELETSYLQESSHIGNALKGFEGFLSSSKSTASA--KRSRKF 76

Query: 182 KEAERLFSKSSITSMA 229
           +  +R+FS SS+TS A
Sbjct: 77  QPEDRVFSLSSVTSPA 92


>At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 507 GFSSESKILSGMGLDSRPGTPKEKESNVNIINKVDLTPNSLKHKM 641
           G SS  +++  +  D RPG P   E  +N +  V +TP  L + M
Sbjct: 177 GASSLEQLIEQLTQDDRPGPPPASEPTINSLPSVKITPQHLTNDM 221


>At5g51270.1 68418.m06356 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 819

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/79 (18%), Positives = 39/79 (49%)
 Frame = +2

Query: 95  YGNIIRGWDRYLTTNKSTNSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKE 274
           YGN++     Y T N+ T ++  K   + + A  +++ + + ++ A S  ++ +K +   
Sbjct: 328 YGNVVTPLGHYFTDNQDTLNEISKLRAELRHAHEMYAVAQVETLDA-SRKLNELKFEELT 386

Query: 275 IVKQNRKLMKTLQTHRLVQ 331
           +++   K +   +T +  Q
Sbjct: 387 LLEHETKGIAKKETEKFEQ 405


>At4g15450.1 68417.m02362 senescence/dehydration-associated
           protein-related similar to senescence-associated protein
           12 [Hemerocallis hybrid cultivar]
           gi|3551958|gb|AAC34857; similar to early-responsive to
           dehydration stress ERD7 protein [Arabidopsis thaliana]
           gi|15320412|dbj|BAB63916
          Length = 331

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 122 RYLTTNKSTNSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMK 271
           R  TTNK+  +K  +R RK   A    SK+ +  +  VSG V    +K K
Sbjct: 232 RNATTNKNQINKNLQRVRKLSRATEKLSKTMLNGVGVVSGSVMGPVVKSK 281


>At2g01750.1 68415.m00104 expressed protein 
          Length = 629

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +2

Query: 149 NSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKEIVKQ 286
           +++A  R  K KEA  L ++ ++ S  A + +VD ++ K +E++KQ
Sbjct: 202 DNRALDRLTKSKEAALLDAERTVQSALAKASMVDDLQNKNQELMKQ 247


>At1g14840.1 68414.m01775 expressed protein
          Length = 604

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = +2

Query: 149 NSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAVKLKMKEIVKQ 286
           ++K+  R  K KEA  L ++ ++ S  A + +VD ++ K +E++KQ
Sbjct: 178 DNKSLDRLTKSKEAALLDAERTVQSALAKASMVDDLQNKNQELMKQ 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,971
Number of Sequences: 28952
Number of extensions: 227320
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)