Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0572.Seq
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874 31 0.96
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 1.7
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 30 1.7
07_01_0036 + 298626-299573,299973-300239 30 2.2
11_06_0338 + 22479804-22480651,22480764-22482954 29 3.9
06_03_1167 + 28111923-28113218 29 3.9
12_02_0640 - 21447470-21448309 29 5.1
12_02_0635 - 21430245-21431156 29 5.1
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 28 6.8
11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541... 28 9.0
>09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874
Length = 257
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 627 RASRMVAGTPRDAPRRRHDGIPEDRSG 707
R+ + G PRD PRR G+PE R+G
Sbjct: 19 RSVLLARGDPRDEPRRAVGGLPERRAG 45
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 195 GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 52
GG LDR E E ++H R H + H + H H D S++ I+
Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = -3
Query: 576 SKRSLARNPGPCRAGLCSPC----LA*PRTKPATPRSPEGSIF 460
S R RNP P G + C + PR P+ R+P GS+F
Sbjct: 99 SAREAVRNPNPTIGGRRANCNIASMGPPRPSPSRGRAPRGSLF 141
>07_01_0036 + 298626-299573,299973-300239
Length = 404
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 515 WLDRVRSQQHRGLRRAVYFIG*NRVFHL*IEEFQCDLLYEL 393
WLDR+ S++H L R IG H F+C+ L EL
Sbjct: 102 WLDRLASREHHRLERLDVNIG--AALHTPASLFRCETLVEL 140
>11_06_0338 + 22479804-22480651,22480764-22482954
Length = 1012
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 261 EDQEPHLAEADRLHNLIEELLPGGRLLD 178
E QE L E + LH I +LL GGR+ D
Sbjct: 8 EKQEEALKEWEPLHESISKLLKGGRITD 35
>06_03_1167 + 28111923-28113218
Length = 431
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 594 TNTR--CPARNGSRASRMVAGTPRDAPRRRHDGIPEDRSGPGDVRRQL 731
+NTR +R G+ ASR A +P PRR+ +G D G V +L
Sbjct: 237 SNTRQTLDSRQGTAASRAKARSPSPRPRRQSNGKATDTRGGNKVVDEL 284
>12_02_0640 - 21447470-21448309
Length = 279
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 576 SKRSLARNPGPCRAGLCSPCLA*PRTKPATPRSPE 472
S+R AR P P R SP PRT P P SP+
Sbjct: 204 SRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPK 238
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 576 SKRSLARNPGPCRAGLCSPCLA*PRTKPATPRSPE 472
S+R AR P P R SP PRT P P SP+
Sbjct: 201 SRRPPARTPPPERRESPSPPRGRPRTPPPPPGSPK 235
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 607 VPRGMGAEHHEWWQEHREMLREDAMMEYLK 696
+P+G+ A E W +HR +L +E LK
Sbjct: 145 IPQGLSAHEGEKWAKHRRILNPVFQLEKLK 174
>11_01_0665 -
5413561-5413593,5413785-5413907,5414020-5414259,
5414564-5415184
Length = 338
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -2
Query: 610 GHLVLVGHSLRK*AVIGQESRPVQSGIVFSVSGLTAYEASNTEVSGGQYISSDKIAFFT 434
G L+L + R + +R ++ G++ G++ + ++ E GG+ I D I F T
Sbjct: 259 GPLLLKSQTGRSAVIDVGTARLIKGGVIKVFQGISKIKTNSIEFHGGKQIPFDAIVFAT 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,984
Number of Sequences: 37544
Number of extensions: 452653
Number of successful extensions: 1483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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