Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0572.Seq
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45073| Best HMM Match : ERM (HMM E-Value=0)                        109   2e-24
SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)              108   5e-24
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  54   2e-07
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               44   1e-04
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               35   0.060
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)            30   1.7  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      30   2.3  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)                29   4.0  
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)                  28   9.1  
SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score =  109 bits (263), Expect = 2e-24
 Identities = 47/66 (71%), Positives = 58/66 (87%)
 Frame = +3

Query: 306 KKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETS 485
           K VM QDVKKE PLQFKFR KF+PEDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+
Sbjct: 3   KAVMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETT 62

Query: 486 VLLASY 503
           VLLASY
Sbjct: 63  VLLASY 68



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +1

Query: 640 WWQEHREMLREDAMMEYLKIAQDLEMYGVNYFE 738
           WW+EH  M +EDA++EYLKI QDLEMYGVNYF+
Sbjct: 113 WWKEHGRMAKEDAVIEYLKITQDLEMYGVNYFQ 145



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +2

Query: 509 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEWEQSI 634
           QA+HGE+         + +++LLP RV DQH +S+E+W++ I
Sbjct: 71  QAKHGEYTD--ESAALIKDEKLLPDRVLDQHTLSKEQWDERI 110


>SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)
          Length = 118

 Score =  108 bits (259), Expect = 5e-24
 Identities = 46/64 (71%), Positives = 57/64 (89%)
 Frame = +3

Query: 312 VMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVL 491
           VM QDVKKE PLQFKFR KF+PEDVA+ELIQE+T K+F+LQ+K AI + +++CPPET+VL
Sbjct: 1   VMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETTVL 60

Query: 492 LASY 503
           LASY
Sbjct: 61  LASY 64



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +2

Query: 509 QARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREEWEQSI 634
           QA+HGE+         + +++LLP RV DQH +S+E+W++ I
Sbjct: 67  QAKHGEYTD--ESAALIKDEKLLPDRVLDQHTLSKEQWDERI 106


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
 Frame = +3

Query: 255 GLQYTDSKGDLTWIKLYKKVMQQ---DVKKENPLQFKFRAKFYPEDVADELIQEITLKLF 425
           GLQY   KGD  W+ L K V +Q     +    +  KFR K++  + A  L +EI   L+
Sbjct: 626 GLQYR-KKGDDWWLDLAKPVAKQLSNHGRIAAVVTLKFRVKYFVCN-AYSLQEEIARYLY 683

Query: 426 YLQVKNAILSDEIYCPPETSVLLASYAVKPD---TENTIPLCTGRDSWPMTAYFLKE*PT 596
           YLQ+K  +L+  + C  + +V+LASY  + D   T  +I + +   +W M    +KE  T
Sbjct: 684 YLQLKKNVLAGLLLCDEQAAVVLASYIAQGDFAYTPISIKVVSANGNWQM----IKELHT 739

Query: 597 NTR 605
           N R
Sbjct: 740 NLR 742


>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +3

Query: 255 GLQYTDSK-GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYL 431
           GL+Y D K G   W++  + + +Q  K   PL F F  KFYPE+    L ++IT   F L
Sbjct: 50  GLRYIDEKDGQFNWLEGDRSIKRQMGKA--PLHFYFAVKFYPENPTT-LREDITRYQFVL 106

Query: 432 QVKNAILSDEIYCPPETSVLLASYAVKPDTENTIP 536
           Q++  +L   I C      LLASY ++ +  +  P
Sbjct: 107 QLREDLLKGRIQCSNPIHALLASYVMQAELGDLHP 141



 Score = 35.1 bits (77), Expect = 0.060
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 139 VRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLRE 243
           V+V  +D++ E  I +TT G  LFDQV   IGL E
Sbjct: 11  VQVAGLDSDYECPIDKTTKGDHLFDQVCDHIGLAE 45


>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = +3

Query: 357 FRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVKPD 518
           FR K+Y E++   L Q+ T  L+YLQ++  +L   I+   ET++LLASYA++ +
Sbjct: 297 FRVKYYVENIC-LLQQQSTRHLYYLQLRKDVLEGGIFVHEETAMLLASYALQAE 349


>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 249 VLGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLF 425
           + GLQYT    G L W+ + K++  Q   +  P  F+F  KFYP +  +  +  ++ +L 
Sbjct: 67  IFGLQYTSWEDGALNWLDMSKEIRSQ---RSKPYHFQFAVKFYPRNPRE--LDPVSRELM 121

Query: 426 YLQVKNAILSDEIYCP 473
            LQVK++++  +   P
Sbjct: 122 CLQVKDSLVRGKFLKP 137


>SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 181 QQTTTGKQLFDQVVKTIGLREVWF--LVFSTPT 273
           +Q+  G +LFD VV+T+G+RE W+  L F  PT
Sbjct: 26  KQSAKGSELFDLVVRTLGVRETWYFGLQFEYPT 58


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
 Frame = +3

Query: 219 CEDDRPPRGV--VLGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVA 389
           C+    PR      GLQY D + G+  W++L+K +  Q  +K+  L  +F  + +P  + 
Sbjct: 51  CDHTDVPRDARRYFGLQYVDRNDGETNWLELHKPIYGQ--QKDKTLSVQFVVRVFP--LN 106

Query: 390 DELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASY 503
              ++ I  +   LQ+K+ +   ++    +   LL SY
Sbjct: 107 PLRMEPIVQRWILLQMKDLLSRGKVKVSLQKHALLDSY 144


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 124 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFLVFSTPTPRATSLG 294
           G++M   +     +L+  I+  TT +QL++QV+K IG+ +  F   +    +  ++G
Sbjct: 278 GRRMVSVIVLNGQKLQMMIETNTTTQQLYEQVIKYIGIPDKIFFGLAQQKAQGNAIG 334



 Score = 31.1 bits (67), Expect = 0.98
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 423 FYLQVKNAILSDEIYCPPETSVLLASYAVKPDTENTIPLCTG 548
           FYLQ++  +L   +YC  E ++ L   A++ +T +  P   G
Sbjct: 426 FYLQLRKDLLDCRLYCHEEAALTLGGLALQAETGDYTPALGG 467


>SB_23707| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=2.2)
          Length = 445

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 459 EIYCPPETSVLLASYAVKPDTENTIPLCTG-RDSWPMTAYFLKE 587
           EIY   E  VLL  Y V      T+ LC G  +S+P+T  +  E
Sbjct: 82  EIYVKEEEEVLLPYYKVNEKVSLTLLLCRGISESYPITVIYDNE 125


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 165  FRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCIIFLKGGSLKP 25
            F V     DVHL  +G+  +      + D+  ST+C +   G S+ P
Sbjct: 935  FTVCESKFDVHLMCAGSSDNFVPKLPSCDRFVSTICCVSASGTSMPP 981


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 631  HHEWWQEHREMLREDAMM 684
            HH+ WQEH++M  +D ++
Sbjct: 1274 HHDNWQEHKQMFTDDQLL 1291


>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
          Length = 453

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 255 GLQYTDS-KGDLTWIKLYKKVMQQDVKKENPLQFKFRAK 368
           GL Y +   G  TW++L K+V+  ++ + +PL   F  +
Sbjct: 50  GLSYAEEGSGAQTWLRLDKRVLDHELPRHDPLILLFAVR 88


>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +3

Query: 258 LQYTDSKGDLT-WIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQ--EITLKLFY 428
           ++  D KG    W++LY+K  Q+  ++    + KFRAK    D+   ++Q  E   K   
Sbjct: 394 MENVDKKGFFQKWLELYEKKYQEWSEENFDSKDKFRAKH--NDLYQSIVQQAEKNYKTNE 451

Query: 429 LQVKNAILSDEIYCPPETSVLLASYAVKPDTENTIPLCTG 548
           L + N  +S+        S+ L   A    T  TI +  G
Sbjct: 452 LPMINNYVSEASLNQASMSIALVFAAEAYHTRGTIRVVVG 491


>SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 243 GVVLGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 344
           G V   +Y++ K D TW  +Y+K + + V ++ P
Sbjct: 22  GSVYARKYSEFKDDQTWTSMYEKNLGRKVSEQPP 55


>SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)
          Length = 419

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 488 VAGFVRGQARHGEHNPALHGPGFLANDRLLPQRVTDQHKMSREE 619
           VA    GQ  HG HN  ++GP F  N+  L  +V+ ++  +  E
Sbjct: 352 VADLPNGQLHHGNHN--INGPLFHGNNNDLNGQVSQRNNYNYSE 393


>SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 121 GGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIG 234
           GGK  N RVT+  +E E  +QQ  +     +  +KT G
Sbjct: 26  GGKPGNTRVTSSKSEFEKLVQQLESATVRIESRLKTPG 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,541,755
Number of Sequences: 59808
Number of extensions: 500909
Number of successful extensions: 1732
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)