Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0572.Seq
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.2  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 322 KTSRKRIHCSSNSEPNSILRMSPMSSYRRS 411
           +TSRKR  CS   E  S    +    YR +
Sbjct: 266 RTSRKRYSCSREREQKSYKNENSYRKYRET 295


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 528 CSPCLA*PRTKPATPRSPEGSIFHRIKSRFSPVDRRV 418
           C P LA P      P + +  +      RFSP  R V
Sbjct: 213 CPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGV 249


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 193 TGKQLFDQVVKTIGLREVWFLVFSTPTPRATSLGSSCTRR*CNKTSRKRIHCSSNSEPNS 372
           TG++ FD +   +   +      S PT   TS+  SC R+  N  +   +     + P+S
Sbjct: 65  TGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSS 124

Query: 373 ILRMSPMS 396
             + SP S
Sbjct: 125 --QASPTS 130


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 319 NKTSRKRIHCSSNSEPNSILRMS 387
           N+  +    CS  S+PN+++++S
Sbjct: 95  NEADQLLAECSPISDPNALIKIS 117


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 195 GGRLLDRELEFRVHRRHADVH 133
           G R  +  L  R+HR    VH
Sbjct: 295 GSRFDEERLTLRIHRGRGSVH 315


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 281 ALGVGVLKTKNHTSRRPIVFTT 216
           ALGVG++  K  +S  P+V  T
Sbjct: 23  ALGVGIMTRKVGSSVSPVVELT 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,538
Number of Sequences: 438
Number of extensions: 4297
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)