Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0572.Seq
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 29 2.4
At4g01560.1 68417.m00202 brix domain-containing protein contains... 29 2.4
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 29 4.3
At4g17483.1 68417.m02615 palmitoyl protein thioesterase family p... 29 4.3
At5g28570.1 68418.m03485 hypothetical protein 28 5.7
At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibit... 28 7.5
At5g27410.1 68418.m03272 aminotransferase class IV family protei... 27 9.9
At4g17480.1 68417.m02614 palmitoyl protein thioesterase family p... 27 9.9
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 27 9.9
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 27 9.9
At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase, pu... 27 9.9
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 88 VCVIITIKMVAGGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGL 237
+C ++ +V G K +NV++ MD ++ +TG+ + + KT+GL
Sbjct: 175 ICPVLERLVVDGTKGVNVKIPNMDVPNLRSLSFRSTGELRIELLRKTLGL 224
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 297 KLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPP 476
K K +Q +K+ Q K RA+ E A EL +E K+ ++N SDE C P
Sbjct: 44 KRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDETVCRP 103
Query: 477 ETSVLLA 497
+ L A
Sbjct: 104 DDEELFA 110
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = -3
Query: 258 DQEPHLAEADRLHNLIEELLPGGRLLDRELEFRVHRRHADVHLFSSGNHFDSY 100
DQEPH R +I G +D LEFR A V L SG HFD +
Sbjct: 188 DQEPHSRLVTRSLQVIASTTKG---IDF-LEFRASEIAAAVALSVSGEHFDKF 236
>At4g17483.1 68417.m02615 palmitoyl protein thioesterase family
protein
Length = 300
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 416 ETLLSTGEKRDFIR*NILPSGDLGVAGFVRGQARHGEHNPALHGPGFLANDRLLPQRVTD 595
E LL DF++ +I PSG + + G + H ++ P L+ + R T+
Sbjct: 152 EALLKLEVYTDFVQDHIAPSGYIKIPGEISKYLEHSKYLPKLNNERPDERNSTFKDRFTN 211
Query: 596 QHKM 607
H +
Sbjct: 212 LHNL 215
>At5g28570.1 68418.m03485 hypothetical protein
Length = 156
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 285 GRPWSRCTEDQEPHLAE--ADRLHNLIEELLPGGRLLDREL 169
GRP+ RC Q+ HL + D ++ + + LP ++D E+
Sbjct: 44 GRPFFRCPTKQDDHLFKWVEDGVYEKVADALPKFSIIDSEI 84
>At5g50060.1 68418.m06199 invertase/pectin methylesterase inhibitor
family protein low similarity to pollen-specific protein
Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
PF04043: Plant invertase/pectin methylesterase inhibitor
Length = 166
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 73 DLIRCVCVIITIKMVAGGKQMNVRVTTMDAELE 171
D+ RC + + +K V GG + N T MD L+
Sbjct: 117 DIFRCTDITMYLKDVVGGNRDNTSKTFMDMTLQ 149
>At5g27410.1 68418.m03272 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 559
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +3
Query: 198 EATLRSSCED-DRPPRGVVLGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFY 374
EATLRS C+D + P + +L + D W + + + + +P ++
Sbjct: 157 EATLRSLCDDLEIPFQASMLKWEAGPIPEDGLWAPWWYETLHKSTGFSSPQKYPQTFPLM 216
Query: 375 PEDVADELIQEITLKLFYLQVKNAILSDEIYCP----PETSVLLA 497
D+ ++ + + +++ K+++LS + P PE + LLA
Sbjct: 217 HYDLLEQCLPLYNILRCHMKHKSSLLSSTLPPPSLPVPENAKLLA 261
>At4g17480.1 68417.m02614 palmitoyl protein thioesterase family
protein
Length = 304
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +2
Query: 422 LLSTGEKRDFIR*NILPSGDLGVAGFVRGQARHGEHNPALHGPGFLANDRLLPQRVTDQH 601
LL T DF++ +I PSG + + ++ H ++ P ++ + R T H
Sbjct: 147 LLKTAVYTDFVQDHIAPSGYIKIPTDIKDYLEHSKYLPKINNERPNERNTTFKDRFTSLH 206
Query: 602 KM 607
+
Sbjct: 207 NL 208
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +3
Query: 315 MQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLL 494
+Q + KKE L + + K PE+ E+ E + + +Q ++A + PET+
Sbjct: 83 IQPEEKKEKVLAEETKQKVVPEESKQEVPPEESKREVVVQPESAKPETKSESKPETTKPE 142
Query: 495 ASYAVKPDTE 524
+ KP+T+
Sbjct: 143 TTSETKPETK 152
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 306 KKVMQQDVKKENPLQFKFRA----KFYPEDVADELIQEITLKLFYLQVKNAI 449
K+VMQ D K E P+ +K K++P DV ++ E + Y + K I
Sbjct: 112 KRVMQDDFKNERPM-WKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGI 162
>At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative (XTR4) identical
to N-terminal partial sequence of xyloglucan
endotransglycosylase-related protein XTR4 GI:1244754
from [Arabidopsis thaliana]; similar to endoxyloglucan
transferase [Arabidopsis thaliana] GI:5533311
Length = 343
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 508 TAYEASNTEVSGGQYISSDKIAFFTCR*KSFNV 410
T ++AS+ SGG+Y ++ K A F KSF++
Sbjct: 197 TIWDASDWATSGGKYKANYKFAPFVAEFKSFSL 229
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,362
Number of Sequences: 28952
Number of extensions: 339973
Number of successful extensions: 1113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -