Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7RGF9 Cluster: Predicted protein; n=1; Nematostella ve...    34   3.5  
UniRef50_Q1MC85 Cluster: Putative site-specific DNA recombinase;...    33   6.1  
UniRef50_UPI0000F2C34A Cluster: PREDICTED: similar to Macrophage...    33   8.1  
UniRef50_A7CEJ5 Cluster: Putative transcriptional regulator, Gnt...    33   8.1  

>UniRef50_A7RGF9 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 3390

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 614  LSTSLFHYKRDPRMLDKH*TFLKYLKSTKHAIYCCNECIHYHRD 745
            L   LF Y  D    D+      + + T  A+YC N+ I+YHRD
Sbjct: 3018 LEARLFEYSTDFLSSDEGEVEYLFRRDTSDALYCYNDDIYYHRD 3061


>UniRef50_Q1MC85 Cluster: Putative site-specific DNA recombinase;
           n=1; Rhizobium leguminosarum bv. viciae 3841|Rep:
           Putative site-specific DNA recombinase - Rhizobium
           leguminosarum bv. viciae (strain 3841)
          Length = 533

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 461 NIRIVGSNKIQTFYTR*S-RTAVSA-VRGRDTRHI*GRPRCSVPSEGGKATMIGSDKQSR 288
           ++RI+  +  Q    R   RT   A    +  R + G  RCS    GG  + IG+D+   
Sbjct: 265 HLRIITDDLFQEVKVRKDERTGTQAHTHPKSKRLLSGLLRCSAC--GGSLSTIGADRSGP 322

Query: 287 RIQGNTRKETRNKPN 243
           R+Q +T KE+ + PN
Sbjct: 323 RVQCSTNKESASCPN 337


>UniRef50_UPI0000F2C34A Cluster: PREDICTED: similar to Macrophage
           colony-stimulating factor 1 precursor (CSF-1) (MCSF)
           (M-CSF) (Lanimostim); n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to Macrophage colony-stimulating
           factor 1 precursor (CSF-1) (MCSF) (M-CSF) (Lanimostim) -
           Monodelphis domestica
          Length = 845

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +2

Query: 239 ISSVCCEFPSLCSLVFCATVCRYLSSWPFLLHSERSSAAALRCDVCLDLALH 394
           +SSVC   P +C LV+ +T  + L SW F     R     L   VC + ALH
Sbjct: 239 VSSVCAHRP-ICLLVYASTGLKGLGSWNFEAQVWRGRGVHLSTCVCTE-ALH 288


>UniRef50_A7CEJ5 Cluster: Putative transcriptional regulator, GntR
           family precursor; n=1; Ralstonia pickettii 12D|Rep:
           Putative transcriptional regulator, GntR family
           precursor - Ralstonia pickettii 12D
          Length = 327

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 157 LYTCLRTPLILVL*QLGARQAPGQTLINQFGLLRVSFL 270
           LY CLRT ++    + G R AP +TL  + G+ R S L
Sbjct: 42  LYACLRTAILSGQIEEGTRLAPSRTLAEELGIARNSVL 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,814,194
Number of Sequences: 1657284
Number of extensions: 13177311
Number of successful extensions: 28297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28294
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)