Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    33   0.061
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   2.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   3.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   7.0  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = +1

Query: 115 WSLAYTIQFLKFILLYTCLRTPLILVL*QLGARQAPGQTLINQFGLLRVSFLVFPCILRD 294
           +SL Y I +  F LL+      ++  +  L A     +      G LR SFL F  +L  
Sbjct: 176 FSLNYLI-YTAFALLFVLCAAIMVRDVAPLAAGSGISEIKCIISGFLRDSFLSFRVMLVK 234

Query: 295 CLSLPIIVAFPPSLGTE 345
           C+ LP+ +A   S+G E
Sbjct: 235 CVGLPLAIASGLSVGKE 251


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 217 APGQTLINQFGLLRVSFLVFPCILRDCLSLPIIVAFPPSLG 339
           AP Q  +++F      FL FPC++   + +  +++  P  G
Sbjct: 9   APVQQFVSRFRSYSSKFLFFPCLIMSLVFMQWLISIGPYSG 49


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +1

Query: 436 LLLPTIRIFQST*----LWRLMCYLFVDIQY*AKD-YFLNISLNLHLDFRYIKN*ENLGF 600
           LL PTI+I Q +     L     Y+F D +   +D Y + +S N+ + + Y+ N E   F
Sbjct: 609 LLRPTIKILQISKHEYFLHFSSSYIFNDAR--ERDVYGVKLSKNMWISWAYVDNCEANFF 666

Query: 601 CFSCTFYF 624
           C   T++F
Sbjct: 667 CKDGTYFF 674


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 207 CEASSGSDVNKSVRFVASFLPCV 275
           C AS GSD   S+R  A+++ CV
Sbjct: 154 CYASVGSDTGGSIRLPAAYVGCV 176


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 326 GKATMIGSDKQSRRIQGNTRKETRNKPN 243
           G  +M GSDK S  +Q  T     +KP+
Sbjct: 333 GHVSMTGSDKLSSHVQSETENAPVSKPS 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,025
Number of Sequences: 5004
Number of extensions: 59027
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)